Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,881,483 |
Δ1 bp |
intergenic (‑126/‑482) |
dnaA ← / → rpmH |
DnaA/50S ribosomal subunit protein L34 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,881,483 | 0 | G | . | 97.9%
| 621.8
/ 3.4
| 142 | intergenic (‑126/‑482) | dnaA/rpmH | DnaA/50S ribosomal subunit protein L34 |
| Reads supporting (aligned to +/- strand): ref base G (3/0); new base . (64/75); total (67/75) |
| Fisher's exact test for biased strand distribution p-value = 1.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
Only 100 of 142 total aligned reads displayed.
TGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCA > NC_000913/3881413‑3881553
|
tgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGGACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGa < 2:4300373/76‑1 (MQ=255)
tgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGa < 2:1409902/76‑1 (MQ=255)
gttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGAt < 2:5470996/76‑1 (MQ=255)
ttgACTGACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc < 2:2202258/76‑1 (MQ=255)
ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc > 1:3065044/1‑76 (MQ=255)
ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc > 2:3410270/1‑76 (MQ=255)
ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc < 1:828494/76‑1 (MQ=255)
ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc < 2:2978323/76‑1 (MQ=255)
gtgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc < 2:1642109/75‑1 (MQ=255)
tgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATcc < 2:2685213/76‑1 (MQ=255)
gACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCt > 1:3745520/1‑76 (MQ=255)
gtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCa > 1:3373966/1‑76 (MQ=255)
gtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCa > 2:2052002/1‑76 (MQ=255)
tacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaa > 1:172748/1‑76 (MQ=255)
cgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaaaa < 2:3673159/76‑1 (MQ=255)
cggcGAAAAGACCCTGATTGAGGGTTACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaaaa < 2:164355/73‑1 (MQ=255)
gtCGAAAAGAGCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc < 2:5663850/76‑1 (MQ=255)
gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc > 2:3512218/1‑76 (MQ=255)
gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc < 2:3038650/76‑1 (MQ=255)
gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc < 1:3959457/76‑1 (MQ=255)
gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc < 1:2197463/76‑1 (MQ=255)
gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc < 2:5413448/76‑1 (MQ=255)
tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACg < 2:3061875/76‑1 (MQ=255)
cGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGa < 1:4680268/76‑1 (MQ=255)
gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt < 2:4670466/76‑1 (MQ=255)
gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt < 2:2738612/76‑1 (MQ=255)
aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg > 2:5364731/1‑76 (MQ=255)
aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg > 2:491022/1‑76 (MQ=255)
aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCgg > 2:1842797/1‑76 (MQ=255)
aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCgg < 1:4916555/76‑1 (MQ=255)
aGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCggg > 1:1920806/1‑76 (MQ=255)
aGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCggg > 1:2333195/1‑76 (MQ=255)
ccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcg > 1:872666/1‑76 (MQ=255)
ccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcg < 1:2182634/76‑1 (MQ=255)
cTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGCTATATGCCGGA‑TCAAGATCCTGCAAAACGATCGGGCCcgc < 2:2458110/76‑1 (MQ=255)
tGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcgcg > 1:398116/1‑76 (MQ=255)
tGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcgcg > 2:2025166/1‑76 (MQ=255)
tcTTGAGTGTGACGCACGAACCACTGGCTGCGGTTATATGCCCGA‑TCAATATCCGGCAAAACGATCGGGACCGCgg < 1:4060042/75‑1 (MQ=255)
cTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGa < 1:95819/76‑1 (MQ=255)
cTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGa > 1:4000685/1‑76 (MQ=255)
cTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGa < 1:2528902/76‑1 (MQ=255)
tGAGTGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATc < 2:3680028/76‑1 (MQ=255)
tGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGCTCGGGACCGCGGATc > 2:4979126/1‑76 (MQ=255)
tGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATc < 1:5525259/76‑1 (MQ=255)
gggggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCa < 2:4331368/74‑1 (MQ=255)
gAGGGTGACGCACGAACCACTGTCGGCGGTTAGATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGCCCGCGGATCa > 2:1776439/1‑76 (MQ=255)
aGGGTGACGCTCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt < 1:1570166/76‑1 (MQ=255)
aGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt > 1:1034541/1‑76 (MQ=255)
gggTGACGCACGAACCGCTGTCTGGGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa < 2:3576010/76‑1 (MQ=255)
gggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa > 2:4030716/1‑76 (MQ=255)
gggTGACGCACGAACCACTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa < 1:986096/76‑1 (MQ=255)
ggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAg < 2:4037508/76‑1 (MQ=255)
gTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGc < 1:5227493/76‑1 (MQ=255)
tGACGCCCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGcc < 1:665536/76‑1 (MQ=255)
gACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCt < 1:774460/76‑1 (MQ=255)
gACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCt < 1:1926323/76‑1 (MQ=255)
gcgcgcgAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTa < 2:1986008/75‑1 (MQ=255)
gcGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTa < 2:4244934/75‑1 (MQ=255)
aCGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTa > 2:4758387/1‑76 (MQ=255)
cGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaa > 1:2720061/1‑76 (MQ=255)
gCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaaa > 1:1254577/1‑76 (MQ=255)
gCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaaa > 2:2434389/1‑76 (MQ=255)
gCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaaa > 1:3499623/1‑76 (MQ=255)
cACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc > 2:1277391/1‑76 (MQ=255)
cGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTg > 1:2546907/1‑76 (MQ=255)
aCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcgc < 2:751162/76‑1 (MQ=255)
cGCTGTCTGCGGTTATATGCCCTA‑TCAAGAGCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCaa < 1:3465669/76‑1 (MQ=255)
cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCaa < 1:4503978/76‑1 (MQ=255)
gCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAag > 2:2655577/1‑76 (MQ=255)
gCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAag > 1:4425944/1‑76 (MQ=255)
cTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAaga < 2:4952758/76‑1 (MQ=255)
cTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAaga < 2:4386876/76‑1 (MQ=255)
tCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt > 2:2648814/1‑76 (MQ=255)
tCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt < 1:2868356/76‑1 (MQ=255)
tCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt > 2:4141642/1‑76 (MQ=255)
tCTGCGGTTATATGAACGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt > 1:1871472/1‑76 (MQ=255)
cTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtc < 2:2629968/76‑1 (MQ=255)
gCGGTGATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtctt < 2:5228829/76‑1 (MQ=255)
cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaaa < 1:1334624/59‑1 (MQ=255)
cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaaa > 2:1334624/1‑59 (MQ=255)
cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttc > 2:181364/1‑76 (MQ=255)
ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct > 2:2309708/1‑76 (MQ=255)
ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct < 2:5164149/76‑1 (MQ=255)
gTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAACCTGCGCAAGAGATCTTCTg < 1:3077048/76‑1 (MQ=255)
gTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg > 2:4967625/1‑76 (MQ=255)
ttATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGt > 1:929324/1‑76 (MQ=255)
ttATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGt < 1:2814445/76‑1 (MQ=255)
ttATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGt > 1:2315313/1‑76 (MQ=255)
ttATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGt < 1:4606370/76‑1 (MQ=255)
atatGCCCGAG‑CAAGATCCTGCAAAACGATTGGGACCGCGGATAATAGCCTAAACTGCGCAAGAGATCTTGTGttt > 1:4717342/1‑76 (MQ=255)
atatGCCCGA‑TCAAGATCCGGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc < 2:3499256/55‑1 (MQ=255)
tatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtc > 2:4352178/1‑76 (MQ=255)
tatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtc < 2:1496166/76‑1 (MQ=255)
atGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct > 1:3040358/1‑76 (MQ=255)
atGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct > 2:663513/1‑76 (MQ=255)
atGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct < 1:3973707/76‑1 (MQ=255)
atGCCCGA‑TCAAGAGCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct < 2:5636723/76‑1 (MQ=255)
tGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtctc > 1:5540422/1‑76 (MQ=255)
gCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca > 2:3277179/1‑76 (MQ=255)
gCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca < 1:445473/76‑1 (MQ=255)
|
TGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCA > NC_000913/3881413‑3881553
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
