Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F999 I1 R1
|
226 |
132.7 |
9745491 |
85.7% |
8351885 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,881,483 |
Δ1 bp |
intergenic (‑126/‑482) |
dnaA ← / → rpmH |
DnaA/50S ribosomal subunit protein L34 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,881,483 | 0 | G | . | 100.0%
| 483.4
/ NA
| 106 | intergenic (‑126/‑482) | dnaA/rpmH | DnaA/50S ribosomal subunit protein L34 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (42/64); total (42/64) |
Only 100 of 106 total aligned reads displayed.
TTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCA > NC_000913/3881412‑3881553
|
ttgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAg > 1:2293012/1‑76 (MQ=255)
tgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGa > 1:131074/1‑76 (MQ=255)
gttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGAt < 1:210960/76‑1 (MQ=255)
gttgACGTACGGCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGAt < 1:500349/76‑1 (MQ=255)
ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc > 1:2384460/1‑76 (MQ=255)
ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc > 1:3812798/1‑76 (MQ=255)
gccgtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCt < 1:1086026/74‑1 (MQ=255)
gACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCt > 2:1827298/1‑76 (MQ=255)
gACGTACGCCTAAACGCCCCTGCTTGAGTGTGCCGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGCTCCt < 1:120627/76‑1 (MQ=255)
acgtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTg < 1:1827299/76‑1 (MQ=255)
gtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCa > 2:1011611/1‑76 (MQ=255)
gtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGCTATATGCCCCA‑TCAAGATCCTGCa > 2:4703245/1‑76 (MQ=255)
tacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaa < 2:1697807/76‑1 (MQ=255)
acgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaaa < 2:2458580/76‑1 (MQ=255)
cgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaaaa > 1:919171/1‑76 (MQ=255)
cgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaaaa < 2:2235176/76‑1 (MQ=255)
gtCGAAAAGGCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc < 2:480940/76‑1 (MQ=255)
gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc < 1:488753/76‑1 (MQ=255)
gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc > 2:1852127/1‑76 (MQ=255)
tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACg < 1:1638737/76‑1 (MQ=255)
tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACg < 1:3935336/76‑1 (MQ=255)
tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACg < 1:3925316/76‑1 (MQ=255)
ggAAAAGGCCCTGCTTGAGGGGNNCGCACGAACCGCTGTCNGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGa < 2:4403576/75‑1 (MQ=255)
cGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGa < 2:1490586/76‑1 (MQ=255)
gAAAAGGCCCTGCGTGAGGGGGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt < 2:277574/76‑1 (MQ=255)
gAAAAGACCCTGCTTGAGGGTGACGCCCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt < 1:2684313/76‑1 (MQ=255)
gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAATATCCTGCAAAACGAt > 1:4400476/1‑76 (MQ=255)
gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt < 2:578308/76‑1 (MQ=255)
aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATc < 1:3401409/76‑1 (MQ=255)
aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATc > 2:2189667/1‑76 (MQ=255)
aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg < 2:3184908/76‑1 (MQ=255)
aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg < 1:2450282/76‑1 (MQ=255)
aaaGACCCTGCTTGAGGGTGACGCACGAACCGCAGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg < 1:479957/76‑1 (MQ=255)
aaaGACACGGCTTGAGGTTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg < 1:2463164/76‑1 (MQ=255)
aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCgg < 1:480280/76‑1 (MQ=255)
aGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCggg < 2:1086440/76‑1 (MQ=255)
aCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGAc < 1:1852128/76‑1 (MQ=255)
cccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGAcc < 1:4584920/76‑1 (MQ=255)
ccTGCTTGAGGGTGACGCCCGACCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGTGACcg < 2:4041245/76‑1 (MQ=255)
ccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcg > 2:3846433/1‑76 (MQ=255)
tGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcgcg < 2:901644/76‑1 (MQ=255)
tGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcgcg < 1:2946864/76‑1 (MQ=255)
gCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCgg > 2:1527084/1‑76 (MQ=255)
cTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGa > 1:2648114/1‑76 (MQ=255)
cTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGa < 2:315848/76‑1 (MQ=255)
ttGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGAt < 1:3065821/76‑1 (MQ=255)
ggggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt < 2:1857642/75‑1 (MQ=255)
aGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt > 1:2097669/1‑76 (MQ=255)
gggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa < 2:2724371/76‑1 (MQ=255)
gggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGAGCATa > 1:602284/1‑76 (MQ=255)
gTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGc > 2:3216971/1‑76 (MQ=255)
tGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGcc > 1:4065877/1‑76 (MQ=255)
cGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaa > 2:3046696/1‑76 (MQ=255)
cACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGGCCGCGGATCATAGCCTAAAc > 2:2581314/1‑76 (MQ=255)
cACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc > 1:4317114/1‑76 (MQ=255)
aCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt < 2:3450285/76‑1 (MQ=255)
aCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt > 1:3510513/1‑76 (MQ=255)
aCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt > 2:1976038/1‑76 (MQ=255)
ggaCCGGTGTCTGCGGTGAGATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgc < 2:216178/74‑1 (MQ=255)
aaCCGGTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcg < 1:3825409/76‑1 (MQ=255)
aaCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcg < 2:1910904/76‑1 (MQ=255)
aaCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcg < 1:485956/76‑1 (MQ=255)
aCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcgc < 2:1656289/76‑1 (MQ=255)
aCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcgc < 2:2384459/76‑1 (MQ=255)
aCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcgc > 1:2631674/1‑76 (MQ=255)
ccGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCa < 2:4619766/76‑1 (MQ=255)
ccGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCa > 2:4680366/1‑76 (MQ=255)
cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCaa < 1:3859407/76‑1 (MQ=255)
cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATAATAGCCTAAACTGCGCaa > 1:2508127/1‑76 (MQ=255)
cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAGCGGGACCGCGGATCATAGCCTAAAATGCGCaa > 1:333057/1‑76 (MQ=255)
gCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAag < 1:3580568/76‑1 (MQ=255)
gCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAag > 1:4781187/1‑76 (MQ=255)
cTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAaga < 2:3302500/76‑1 (MQ=255)
cTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAaga < 1:4598263/76‑1 (MQ=255)
ggTCTGCGGTTATAGGCCAGA‑ACAAGATCCCGCAAAAAGAACGGGACAGCGGATCATAGCCTAAACTGCGCAagac > 1:366421/2‑75 (MQ=255)
gTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAgaga > 2:4423030/1‑76 (MQ=255)
tCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt < 1:601735/76‑1 (MQ=255)
tCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt < 2:4183033/76‑1 (MQ=255)
tggggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct < 2:4692267/73‑1 (MQ=255)
tGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct > 1:3232754/1‑76 (MQ=255)
tGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct < 1:4298963/76‑1 (MQ=255)
gCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtctt > 1:490013/1‑76 (MQ=255)
gggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttc < 2:3604664/75‑1 (MQ=255)
cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcg < 1:478504/43‑1 (MQ=38)
cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcg > 2:478504/1‑43 (MQ=38)
cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttc > 1:815156/1‑76 (MQ=255)
ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct > 2:2589474/1‑76 (MQ=255)
ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct < 2:2741660/76‑1 (MQ=255)
ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct < 2:1661274/76‑1 (MQ=255)
ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct > 1:735467/1‑76 (MQ=255)
gtgatatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg < 2:724435/73‑1 (MQ=255)
gTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg < 2:4812895/76‑1 (MQ=255)
gTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg > 2:422471/1‑76 (MQ=255)
atatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGttt > 1:3804531/1‑76 (MQ=255)
atGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct < 1:794650/76‑1 (MQ=255)
atGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct < 2:4514806/76‑1 (MQ=255)
tGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtctc < 2:3032468/76‑1 (MQ=255)
gCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCCAGAGCTCTTCTGTTtcccc > 2:53184/1‑73 (MQ=255)
gCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca < 2:3343389/76‑1 (MQ=255)
gCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca > 2:3598062/1‑76 (MQ=255)
|
TTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCA > NC_000913/3881412‑3881553
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
