Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,961,588 |
C→G |
R86T (AGG→ACG) |
gppA ← |
guanosine pentaphosphatase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,961,588 | 0 | C | G | 99.5%
| 494.3
/ NA
| 184 | R86T (AGG→ACG) | gppA | guanosine pentaphosphatase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (100/83); minor base T (0/1); total (100/84) |
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 184 total aligned reads displayed.
CACCTGTACCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACCTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAGGCGCAAACATT > NC_000913/3961515‑3961660
|
cACCTGTACCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTc > 2:1401081/1‑76 (MQ=255)
cccTGTACCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCg < 1:529416/75‑1 (MQ=255)
aCCTGTACCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCg > 1:1686039/1‑76 (MQ=255)
tGTACCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCg > 2:1161389/1‑76 (MQ=255)
ggaCCGGACAGCCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGt < 2:756577/74‑1 (MQ=255)
tACCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTa < 1:4434648/76‑1 (MQ=255)
tACCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTa > 2:4812236/1‑76 (MQ=255)
gaCCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTa < 2:3684361/75‑1 (MQ=255)
cccGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCGCCCGCATTGACGGCAAGGCGTAACGTCGCCGTAg < 2:2278607/75‑1 (MQ=255)
aCCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAg < 2:3353332/76‑1 (MQ=255)
aCCCGACAACCGAGACTTTCCTGCGCTTTGGCAATAAAACCACCCGCATTGACGGCAAGGCGTAACGTCGCCGCAg > 2:3062828/1‑76 (MQ=255)
ccGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGc > 1:3013805/1‑76 (MQ=255)
cGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCg > 1:4577118/1‑76 (MQ=255)
ggACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGa > 1:4030050/1‑76 (MQ=255)
gACAGCCGGGGATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGAc < 2:668847/76‑1 (MQ=255)
cAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACaa < 2:4299744/76‑1 (MQ=255)
cAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACaa > 2:5366144/1‑76 (MQ=255)
cAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACaa < 1:4158626/76‑1 (MQ=255)
aaCCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAc < 2:315644/76‑1 (MQ=255)
aaCCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAc < 2:1588022/76‑1 (MQ=255)
aCCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAcg < 2:1904303/76‑1 (MQ=255)
aCCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAcg > 1:324977/1‑76 (MQ=255)
ccGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAcgc > 2:693992/1‑76 (MQ=255)
ccGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAcgc < 1:1008927/76‑1 (MQ=255)
ccGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAcgc < 2:796033/76‑1 (MQ=255)
cGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAcgcg > 1:576748/1‑76 (MQ=255)
cGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAcgcg > 1:874914/1‑76 (MQ=255)
gagaATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGa > 2:5526728/1‑76 (MQ=255)
gagaATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGa > 1:4993970/1‑76 (MQ=255)
agaATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGaa < 2:1624876/76‑1 (MQ=255)
gaATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAAt > 2:1733630/1‑76 (MQ=255)
gaATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAAt > 1:2557901/1‑76 (MQ=255)
aaaTTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAAt < 1:447192/75‑1 (MQ=255)
gaTTTCCTGCGCTTTGGCAATAAAAGCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAAtt < 2:5577472/75‑1 (MQ=255)
aaTTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAAtt < 2:4422733/76‑1 (MQ=255)
aTTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAAttt < 1:1034531/76‑1 (MQ=255)
aTTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAAttt < 1:4378678/76‑1 (MQ=255)
tttCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTg > 1:2412242/1‑76 (MQ=255)
tttCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTg > 1:1811432/1‑76 (MQ=255)
tttCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTg < 2:1232316/76‑1 (MQ=255)
ttCGTGCGCTGTGGCAATAAACTCGCCCGCATTGACGGCAAGGCGTAACGGCGCCGTCGCGCCAGCGCGAATTTGc < 2:2961234/76‑1 (MQ=255)
ttCCTGCGCTGTGTCAACAAAATCACCTGCCATGACGCCAAGCACAGACGTCGCCGGAGCGACAACGCGGATTTGc > 2:3469003/1‑76 (MQ=255)
cTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCgag < 1:5037609/76‑1 (MQ=255)
cTGCGCGTTGGCAATAAAAACACCCGCATGGACGGCAAGGCGTAACGGCGCCGTAGCGACAACGCGAATTTGCgag < 2:243935/76‑1 (MQ=255)
cgcTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCgaggga > 1:5554392/1‑76 (MQ=255)
gcTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCgagggag > 2:3562167/1‑76 (MQ=255)
gcTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCgagggag > 1:423441/1‑76 (MQ=255)
gcTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCgagggag < 1:693992/76‑1 (MQ=255)
cTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACACCGCGAATTTGCgcgggagg > 2:5770808/1‑76 (MQ=255)
cTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCgagggcgg > 1:5385367/1‑76 (MQ=255)
tttGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGggagga < 2:4719264/76‑1 (MQ=255)
ttGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGaa > 2:2688536/1‑76 (MQ=255)
ttGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACGGCGCCGTAGCGACATAGAGCATTTGCGCGGGAGGaa > 1:3866136/1‑76 (MQ=255)
ggCAATAAAATCCCCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAata < 2:5041597/76‑1 (MQ=255)
cAATAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGACGTAGCGACAACGCGAATTTGTGAGGGAGGGATATc > 1:5505830/1‑76 (MQ=255)
aaTAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCt < 2:3243128/76‑1 (MQ=255)
aaTAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCt > 1:3725940/1‑76 (MQ=255)
aTAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCtt < 1:2684565/76‑1 (MQ=255)
aTAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCtt < 2:2063351/76‑1 (MQ=255)
aTAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCtt > 2:4946797/1‑76 (MQ=255)
aTAAAATCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCtt < 1:1401081/76‑1 (MQ=255)
aaaaTCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGc < 2:2948258/76‑1 (MQ=255)
aaaTCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCa > 2:5731437/1‑76 (MQ=255)
aaaTCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCa < 1:4334442/76‑1 (MQ=255)
aaTCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAg > 2:2310640/1‑76 (MQ=255)
tcccccGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAAAGCGAATTTGCGAGGGAGGAATATCTTGCAGAc > 1:354487/4‑76 (MQ=255)
tCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGAc < 1:4528216/76‑1 (MQ=255)
tCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGAc < 1:4710224/76‑1 (MQ=255)
tCACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGAc > 2:5226203/1‑76 (MQ=255)
cACCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACg < 1:3992910/76‑1 (MQ=255)
aCCCGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTCGCGAGGGAGCAATATCTTCCACACGt > 2:52831/1‑76 (MQ=255)
ccGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTc > 1:5154899/1‑76 (MQ=255)
cGCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCa < 2:2864906/76‑1 (MQ=255)
gCATTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAg < 1:52606/76‑1 (MQ=255)
aTTGGCGGCCAGGGGTAACTTCGCCGTAGCGACACCGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCa < 2:3866135/76‑1 (MQ=255)
aTTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGcg > 2:1828988/1‑75 (MQ=255)
aTTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCa > 2:2339581/1‑76 (MQ=255)
aTTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCa < 1:3405849/76‑1 (MQ=255)
aTTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCa > 1:1862225/1‑76 (MQ=255)
aTTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCa > 1:2863354/1‑76 (MQ=255)
aTTGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCa > 1:3801587/1‑76 (MQ=255)
ttGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCCGACGTTCCGCaa > 2:2606339/1‑76 (MQ=255)
ttGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTAAGCaa > 2:5416648/1‑76 (MQ=255)
tGACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCaac > 2:1248809/1‑75 (MQ=255)
gACGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAAc > 2:3504788/1‑76 (MQ=255)
aCGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACa > 1:376333/1‑76 (MQ=255)
aCGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACa < 2:4441124/76‑1 (MQ=255)
cGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAg < 1:4284068/76‑1 (MQ=255)
cGGCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAg < 1:5731439/76‑1 (MQ=255)
ggCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAgg > 1:2217834/1‑76 (MQ=255)
ggCAAGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAgg < 1:5556242/76‑1 (MQ=255)
aaGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAGgcgc > 1:197574/1‑76 (MQ=255)
aaGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAGgcgc > 1:4653682/1‑76 (MQ=255)
aaGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAGgcgc > 2:5796389/1‑76 (MQ=255)
aaGGCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGCTCAGCAAACAGgcgc > 1:1259109/1‑76 (MQ=255)
agtcGTCACGTCGCCGCAGCGACACCGCGAATTTGCGAGGGAGGAATATCTTGCAGGCGTTCAGCAAACAGGCGCa < 1:1589299/73‑1 (MQ=255)
gCGTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAGGCGCaaa < 1:618480/76‑1 (MQ=255)
gTAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAGGCGCAAACa > 2:198030/1‑76 (MQ=255)
tAACGTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAGGCGCAAACAt < 1:276907/76‑1 (MQ=255)
aaCGTCGCCGTAGCGACAACGCGAATTTGCGTGGGAGGAATATCTTGCAGACGTTCAGCAAACCGGCGCAAACAtt < 2:3919252/76‑1 (MQ=255)
|
CACCTGTACCGGACAACCGAGAATTTCCTGCGCTTTGGCAATAAAATCACCCGCATTGACGGCAAGGCGTAACCTCGCCGTAGCGACAACGCGAATTTGCGAGGGAGGAATATCTTGCAGACGTTCAGCAAACAGGCGCAAACATT > NC_000913/3961515‑3961660
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A