Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
3,968,317 |
+CGT |
coding (612/1170 nt) |
wecB → |
UDP‑N‑acetyl glucosamine ‑2‑epimerase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3968317 | 6 (0.040) | 155 (1.020)
+CGT |
87/144 |
0.2 |
96.4% |
coding (612/1170 nt) |
wecB |
UDP‑N‑acetyl glucosamine ‑2‑epimerase |
| ? | NC_000913 |
3968318 = |
6 (0.040) | coding (613/1170 nt) |
wecB |
UDP‑N‑acetyl glucosamine ‑2‑epimerase |
Only 100 of 169 total aligned reads displayed.
ATCTTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3968243‑3968317
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCACAGGCGTGA > NC_000913/3968318‑3968391
|||
ATCTTCATTACCGGTAATACAGTCATTGATGCTCTGTTATGGGTGCGTGCCCAGCTGATGAGCAGCGACAAGCTGC < 1:1482379/76‑1
ATCTTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGC < 1:2855314/76‑1
ATCTTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGC < 1:2152808/76‑1
TCTTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCG < 2:4875882/76‑1
TCTTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCG < 2:2232258/76‑1
CTTCATTACGGGTATGACAGTCATTGATGCACTGTTAGGGGTGGGTGACGAGGTGATGAGCAGCGACAAGCTGCGT < 1:3911755/76‑1
CTTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGT < 2:2619584/76‑1
CTTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGT > 2:1608041/1‑76
CTTCATTAACGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGCTGAGCAGCGCCAAGCTGCGc > 2:4316210/1‑75
TTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTT > 1:4959064/1‑76
TTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGGGATGAGCAGCGACGAGCTGCGTT > 1:2374479/1‑76
TTCATTACCGGTAATACAGTCAGTGATGCAATGTGATGGGGGCGTGACCAGGTGATGAGCAGCGACACGCTGCGTT > 2:4143418/1‑76
TCATTACCGGTAATACAGTCATTGATGCACGGGTAGGGGTGCGTGACCAGGTGATGAGCAGCTACAAGCTTCGTTC > 1:3633331/1‑76
CATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCA < 1:5550071/76‑1
ACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAAC > 1:911384/1‑76
CCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACT > 1:3072104/1‑76
CGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTG < 1:1052487/76‑1
CGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTG > 1:5669076/1‑76
GTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGC < 1:309020/76‑1
TAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCG > 1:3572200/1‑76
TAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCG < 1:3239455/76‑1
AATACAGTCATTGGTGCACGGGTATGGGGGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGG < 2:1906187/76‑1
ATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGC < 2:1003847/76‑1
ATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGC < 1:4426961/76‑1
ATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGC < 2:5521139/76‑1
TACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCA > 1:1570361/1‑76
ACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGGTGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAA < 1:1469251/76‑1
ACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGGAA > 1:1735368/1‑76
ACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAA > 2:4899667/1‑76
ACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAA > 1:491207/1‑76
ACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAA > 1:1314966/1‑76
ACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAA < 1:2178239/76‑1
CAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAA < 2:4014328/76‑1
cggCATTGCTGCACTGTTATGGGTGCGTGCCCAGGTGATGAGCAGCGACAAGCTGCGTTCAGCACTGGCGGCAAAT > 2:4468416/4‑76
AGTCATTGAGGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAAT < 2:2255518/76‑1
GTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCACATT > 2:252930/1‑76
GTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGAGACAAGCTGCGTGCAGAACTGGCGGCAAATT > 1:5744939/1‑76
CATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTAC > 2:5407462/1‑76
ATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACC > 2:3684573/1‑76
TGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCG > 2:802254/1‑76
TGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCG < 2:4959063/76‑1
TGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCG > 1:3344213/1‑76
GATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGACCTGGCGGCAAATTACCCGT < 2:1254421/76‑1
GATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGT < 1:1202179/76‑1
GATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGT < 2:710483/76‑1
ATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTAACCGct > 2:930509/1‑74
GCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTA < 1:3169392/76‑1
GCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGCTTA > 2:428020/1‑76
ACTGTTATGGGTGCGTGACCAGGTGATGAGCCGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATC > 1:4312687/1‑76
ACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATC > 1:5540582/1‑76
ACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATC < 2:3225178/76‑1
GTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGAC < 1:3033294/76‑1
GTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGAC < 1:3551400/76‑1
GTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGAC < 2:5122276/76‑1
TTATGTGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACC < 1:2330405/76‑1
TTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACC < 2:3453221/76‑1
TATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCC < 1:2973526/76‑1
ATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCC < 2:3037762/76‑1
TGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTCTATCGACCCCG > 2:3619302/1‑76
GTGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATA < 1:3808480/76‑1
TGCGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATAGACCCCGATAA > 1:392465/1‑76
CGTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAA > 1:345396/1‑76
GTGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAA > 1:2554685/1‑76
TGACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAG > 1:4728007/1‑76
GACCGGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGA < 2:369647/76‑1
GACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGCACAAAAGA > 2:409783/1‑76
ACCAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGAT < 1:4551236/76‑1
CAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGA > 2:781066/1‑76
CAGGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGA > 1:518689/1‑76
gGGTGATGGTCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTCTCGACCCCGATAAAAAGATGAT < 1:5758014/75‑1
GGTGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGGTTATCGACCCCGATAAAAAGATGATT > 1:2616132/1‑76
TGATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCT < 2:4091033/76‑1
GATGAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTG < 2:2732916/76‑1
ATGAGCAGCGACAAGCTGCGTACAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGG < 2:1784015/76‑1
GAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTG < 1:1053502/76‑1
GAGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTG < 1:1650178/76‑1
AGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTCCCCGTTTATCGCCCCCGATAAAAAGATGATTCTGGTGA < 1:4677427/76‑1
AGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGA > 1:427069/1‑76
AGCAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGA > 1:452612/1‑76
CAGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACC < 2:2450859/76‑1
AGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCG < 1:1289678/76‑1
AGCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCG > 2:5001978/1‑76
GCGACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGG > 1:5683830/1‑76
GACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTC > 1:5631272/1‑76
GACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTC < 1:1962373/76‑1
GACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAG < 1:824898/57‑1
ACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTC > 1:1497104/1‑63
ACAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTC < 2:1497104/63‑1
CAAGCTGCGTTCAGAACTGGCGGCAAATTACCCGCTTATCGACCCCGATAACAAGATGATTCTGGCGACCCGTCcc > 2:59806/1‑74
CAAGCGGCGTTCAGAACTGGCGGCAAATTACCCGTGTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCAC < 2:2374479/76‑1
AAGCTGCGTTCAGACCTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCcca < 1:4670848/76‑4
AAGCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCG > 2:5552759/1‑70
AAGCTGCGTTCAGAACTGGCGGAAAATTACCCGTTCATCGACCCCGATAAAAACATGATCCTGGTCACCGGTCACc > 2:4663307/1‑75
GCTGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCACAGG > 1:4186299/1‑76
TGCGTTCAGAGCTGGCGGCAAATTACCCGTTTATCGA‑CCCGATAAAAAGATGATTCTGGTGACCGGTCCCAGGCGT < 1:252930/76‑1
TGCGTTCAGAACTGGTGGCAAATTACCCATTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCACAGGCG > 1:803303/1‑76
TGCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCACAGGCG > 2:3562207/1‑76
GCGTTCAGAACTGGCTGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCACAGGCGT < 1:609799/76‑1
GCGTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCACAGGCGT < 2:1314966/76‑1
GTTCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCACAGGCGTGA > 2:3212125/1‑76
|||
ATCTTCATTACCGGTAATACAGTCATTGATGCACTGTTATGGGTGCGTGACCAGGTGATGAGCAGCGACAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3968243‑3968317
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAGAACTGGCGGCAAATTACCCGTTTATCGACCCCGATAAAAAGATGATTCTGGTGACCGGTCACAGGCGTGA > NC_000913/3968318‑3968391
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
