Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F999 I1 R1 226 132.7 9745491 85.7% 8351885 75.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,872,450 +G coding (338/387 nt) yidW ← regulator protein for dgo operon

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,872,4501.G99.3% 365.2 / ‑3.8 140coding (338/387 nt)yidWregulator protein for dgo operon
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base G (72/67);  total (72/68)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

Only 100 of 146 total aligned reads displayed.

GTCCTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CT‑CCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCGT  >  NC_000913/3872375‑3872519
                                                                             |                                                                     
gTCCTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑Ct                                                                        <  1:2824116/76‑1 (MQ=255)
 tCCTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑Ctg                                                                       <  1:3143339/76‑2 (MQ=255)
  ccTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑Ctgc                                                                      <  1:2135880/76‑3 (MQ=255)
  ccTGATTGTTGGAAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAACTCGCGCGCTCCG‑Ctgc                                                                      >  1:240706/1‑74 (MQ=255)
      aTTGTTGGCAATCATCTCGTTCGGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCaa                                                                  >  1:122269/1‑76 (MQ=255)
        tgttgtCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACg                                                                <  2:3299075/76‑1 (MQ=255)
         gttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCCACgg                                                               >  2:1479642/1‑76 (MQ=255)
         gttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACgg                                                               <  2:1301232/76‑1 (MQ=255)
         gttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACgg                                                               >  2:4679487/1‑76 (MQ=255)
         gttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACgg                                                               >  1:2369217/1‑76 (MQ=255)
          ttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACggg                                                              <  1:1210332/76‑1 (MQ=255)
            ggCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCa                                                            >  1:987429/1‑76 (MQ=255)
              cAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAAt                                                          <  1:422430/76‑1 (MQ=255)
               aaTCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATc                                                         <  2:2115654/76‑1 (MQ=255)
               aaTCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATc                                                         <  1:2085416/76‑1 (MQ=255)
               aaTCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTA‑CTGCCCAACGGGCAATc                                                         <  2:446239/76‑1 (MQ=255)
                atcatcTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CCGCCCAACGGGCAATCg                                                        >  1:3229656/1‑76 (MQ=255)
                 tcatcTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGc                                                       <  2:3575142/76‑1 (MQ=255)
                  catcTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGcc                                                      <  2:3683219/76‑1 (MQ=255)
                        gTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCCACGGGCAATCCCCCGTTcc                                                >  2:3101687/1‑76 (MQ=255)
                         ttCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCACTCGCCGGTTccc                                               >  2:4868381/1‑75 (MQ=255)
                         ttCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTcca                                               >  1:1348178/1‑76 (MQ=255)
                          tCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccac                                              <  1:2569595/76‑1 (MQ=255)
                          tCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccac                                              >  1:4701705/1‑76 (MQ=255)
                           cAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccacc                                             >  1:3137328/1‑76 (MQ=255)
                            aGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccacca                                            >  1:4156599/1‑76 (MQ=255)
                            aGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccacca                                            >  1:3366102/1‑76 (MQ=255)
                             gcgcCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAg                                           >  2:2193324/1‑76 (MQ=255)
                               gcCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAt                                         <  1:642293/76‑1 (MQ=255)
                               gcCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAt                                         >  2:1220849/1‑76 (MQ=255)
                               gcCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAt                                         <  1:2631047/76‑1 (MQ=255)
                                ccGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAtt                                        <  1:78062/76‑1 (MQ=255)
                                 cGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAttt                                       <  2:3228004/76‑1 (MQ=255)
                                  gATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTc                                      >  2:823085/1‑76 (MQ=255)
                                  gATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGCTCCACCAGATTTc                                      >  2:155521/1‑76 (MQ=255)
                                    ttCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGc                                    <  1:395285/76‑1 (MQ=255)
                                    ttCAAGCTGCGCCAGATCGCTGGAAGTCGACCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGc                                    >  2:3317209/1‑76 (MQ=255)
                                      cAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCAc                                  >  2:2996132/1‑76 (MQ=255)
                                       aaccTGCGCCAGATCGCTGGAAGCCGCGCGCTCTG‑CTGCCCAACCGCCACTCGCCCTCTCCACCCCATCTCGCACt                                 >  2:35680/4‑76 (MQ=255)
                                        aTCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACtt                                <  1:3063305/76‑1 (MQ=255)
                                         tCTGCGCCAGCTCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTc                               <  1:4744317/76‑1 (MQ=255)
                                         tCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTc                               <  1:1384238/76‑1 (MQ=255)
                                         tCTGCGCCAGATCGCTGGAAGCCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTc                               >  2:495518/1‑76 (MQ=255)
                                          cTGCGCCAGATCGCTGGAAGTCTCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCg                              <  1:3431720/76‑1 (MQ=255)
                                          cTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCg                              <  1:2940339/76‑1 (MQ=255)
                                          cTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCg                              >  1:3039528/1‑76 (MQ=255)
                                           tGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGc                             <  1:4528553/76‑1 (MQ=255)
                                            gcgcCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCt                            >  2:4300156/1‑76 (MQ=255)
                                             cgcCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTc                           >  1:4124139/1‑76 (MQ=255)
                                              gcCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCa                          <  1:4509002/76‑1 (MQ=255)
                                               ccAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCAt                         <  2:1873603/76‑1 (MQ=255)
                                                 aGATCGGGGGAAGGCGGGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATgg                       <  2:2362520/76‑1 (MQ=255)
                                                 aGATCGCTGGAGTGCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATgg                       <  1:2409032/76‑1 (MQ=255)
                                                 aGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAttt                                       <  2:2292077/60‑1 (MQ=255)
                                                 aGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAttt                                       >  1:2292078/1‑60 (MQ=255)
                                                   aTCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCa                     >  2:3737842/1‑76 (MQ=255)
                                                    tCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCAc                    <  1:834300/76‑1 (MQ=255)
                                                    tCGCTGGAAGTCGCGCGCCCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCAc                    <  1:247392/76‑1 (MQ=255)
                                                     ctcTGTAAGGCGCGCGCTCGGCCG‑CGCAACGGGCAATCGCCGGTTCCACCAGATTGCGCACTTCGCTCATGGCACt                   <  2:4477425/74‑1 (MQ=255)
                                                     cGCTGTAAGTCGCTCGCTCTG‑CTGCCCAACGGGCAGTCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACt                   <  1:706245/76‑1 (MQ=255)
                                                     cGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACt                   <  1:4148298/76‑1 (MQ=255)
                                                     cGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACt                   <  2:4283096/76‑1 (MQ=255)
                                                      gCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTg                  >  1:2926424/1‑76 (MQ=255)
                                                        tGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCCCTTCGCTCATGGCACTgct                >  2:1570337/1‑74 (MQ=255)
                                                        tGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCACGGCACTGAt                >  2:3810292/1‑76 (MQ=255)
                                                        tGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGGTCCATCAGATTTCGCACTTCGCTCATGGCACTGAt                >  1:3133888/1‑76 (MQ=255)
                                                        tGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCAGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGAt                >  1:853024/1‑76 (MQ=255)
                                                        tGGAAGTCGCGCGCGCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGAt                <  2:4375409/76‑1 (MQ=255)
                                                        gggAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGAt                <  2:92561/75‑1 (MQ=255)
                                                         ggAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATa               >  1:2824679/1‑76 (MQ=255)
                                                         ggAAGTCGCGCGCTCTG‑CTGCCCAACGGGACATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATa               >  1:3897710/1‑76 (MQ=255)
                                                          gAAGTCGCGAGCTCTG‑CTGCACAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATaa              >  2:611658/1‑76 (MQ=255)
                                                           aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCTCCGATAAg             >  2:55241/1‑76 (MQ=255)
                                                           aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATaac             >  2:4836926/1‑75 (MQ=255)
                                                           aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAg             <  1:1692437/76‑1 (MQ=255)
                                                           aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAg             >  2:1673209/1‑76 (MQ=255)
                                                           aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAg             <  2:2695036/76‑1 (MQ=255)
                                                            aGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGc            <  2:1262382/76‑1 (MQ=255)
                                                            aGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGc            <  1:2619394/76‑1 (MQ=255)
                                                            aGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGc            <  2:3545203/76‑1 (MQ=255)
                                                            aGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGc            >  1:3261363/1‑76 (MQ=255)
                                                             gTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGcc           <  2:4156599/76‑1 (MQ=255)
                                                             gTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGcc           <  2:2615210/76‑1 (MQ=255)
                                                              tCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCg          >  2:4255360/1‑76 (MQ=255)
                                                              gcgcgggCGCTG‑CTGCCCAACGGGCAATCGCCGGTTCCGCCAGATTGCGCACTTCGCTCCTGGCACTGATAAACCg          <  2:4530359/75‑1 (MQ=255)
                                                               cgcgcgCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGt         >  2:3449553/1‑76 (MQ=255)
                                                               cgcgcgCTCTG‑CTGCCCAACGGGCAATCGCCGGCCCCACCAGATTTCGCACTTCGCTCATGGCCCTGATAAGCCGt         >  2:112962/1‑76 (MQ=255)
                                                               cgcgcgCTCTG‑CTGCCCAACGGGCAATCGCCGGATCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGt         <  1:60573/76‑1 (MQ=255)
                                                                gcgcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTg        <  2:3238035/76‑1 (MQ=255)
                                                                gcgcgcTCTG‑CTGCCCAACGGGAAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTg        <  2:861358/76‑1 (MQ=255)
                                                                  gcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTggg      >  1:1954124/1‑76 (MQ=255)
                                                                  gcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTggg      >  1:4594712/1‑76 (MQ=255)
                                                                  gcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTggg      >  1:2669332/1‑76 (MQ=255)
                                                                  gcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTggg      >  2:3454112/1‑76 (MQ=255)
                                                                   cgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGt     <  2:3916612/76‑1 (MQ=255)
                                                                    gcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTc    >  2:4610545/1‑76 (MQ=255)
                                                                    gcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTc    >  2:2161237/1‑76 (MQ=255)
                                                                     ctctG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCg   <  1:1114218/76‑1 (MQ=255)
                                                                      tctG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCgc  >  2:4733721/1‑75 (MQ=255)
                                                                      tctG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCGt  >  1:4656214/1‑76 (MQ=255)
                                                                             |                                                                     
GTCCTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CT‑CCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCGT  >  NC_000913/3872375‑3872519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A