Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	715	38.4	1606192	96.6%	1551581	120.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,447,869	Δ1 bp	coding (3758/3780 nt)	tamB →	translocation and assembly module for autotransporter export, inner membrane subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,447,867	0	T	.	100.0%	244.0 / NA	58	coding (3756/3780 nt)	tamB	translocation and assembly module for autotransporter export, inner membrane subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (31/27); total (31/27)

GCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCAGTTGTA  >  NC_000913/4447731‑4448000

gCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGAttg                                                                                                                                     >  2:598051/1‑138 (MQ=255)

gCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGAttg                                                                                                                                     <  2:167299/139‑2 (MQ=255)

gCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGAttg                                                                                                                                     >  1:777661/1‑138 (MQ=255)

 cGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCGATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGAttgc                                                                                                                                    >  1:519351/1‑137 (MQ=255)

      aTGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTAt                                                                                                                              >  1:797880/1‑139 (MQ=255)

              ccAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTGTATCAGTTCGa                                                                                                                      >  2:522650/1‑139 (MQ=255)

              ccAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGtt                                                                                                                         >  2:639352/1‑136 (MQ=255)

              ccAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGtt                                                                                                                         <  1:639352/136‑1 (MQ=255)

                 ggTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGtt                                                                                                                   >  1:292970/1‑139 (MQ=255)

                   tCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGtttt                                                                                                                 >  2:285787/1‑139 (MQ=255)

                                                   aCTCTATAGCAACACTCACGTTACGTTATAGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACGAGGCACTGGA‑TTGCTCTATCAGTGCGAGTTTTAACAATGCGAATATTTATCTACGGCAGTTTAc                                                                                 >  2:535299/1‑139 (MQ=255)

                                                       tataGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCca                                                                             >  1:27411/1‑139 (MQ=255)

                                                       tataGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCca                                                                             >  2:308918/1‑139 (MQ=255)

                                                       tataGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCca                                                                             >  1:412833/1‑139 (MQ=255)

                                                       tataGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCATGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCca                                                                             >  1:214976/1‑139 (MQ=255)

                                                         taGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCcaca                                                                           >  2:425397/1‑139 (MQ=255)

                                                         taGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCcaca                                                                           >  2:700976/1‑139 (MQ=255)

                                                           gCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCacaaa                                                                         <  2:490612/139‑1 (MQ=255)

                                                             aaCACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCacaaaca                                                                       <  1:700976/139‑1 (MQ=255)

                                                             aaCACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCacaaaca                                                                       <  1:434344/139‑1 (MQ=255)

                                                               cacTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAg                                                                     >  2:351087/1‑139 (MQ=255)

                                                                 cTCGCGTTACGTTATCGCCTGATGCCTAAGACATATCTGGCAGCCGTGTCTG‑‑GAGTAGGCCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAAGAATGCGAATATTTCTCTACGGACCTTTACGCCACAAACAAgtc                                                                   >  1:238079/1‑137 (MQ=255)

                                                                 cTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGc                                                                   >  2:410411/1‑139 (MQ=255)

                                                                 cTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGc                                                                   >  1:590370/1‑139 (MQ=255)

                                                                   cACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCaa                                                                 <  2:461084/139‑1 (MQ=255)

                                                                    acgttacgttATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGAt                                                                                                                                       >  2:276688/1‑69 (MQ=255)

                                                                    acgttacgttATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGAt                                                                                                                                       <  1:276688/69‑1 (MQ=255)

                                                                    acgttacgttATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAAc                                                                >  2:539962/1‑139 (MQ=255)

                                                                       ttacgttaTCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGt                                                             <  2:27411/139‑1 (MQ=255)

                                                                          cgttaTCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCAc                                                          >  1:635629/1‑139 (MQ=255)

                                                                               tCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGAt                                                     <  1:593026/139‑1 (MQ=255)

                                                                               tCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGAt                                                     <  1:354855/139‑1 (MQ=255)

                                                                                    tGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGAc                                                  <  1:70688/139‑1 (MQ=255)

                                                                                         ccTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGcc                                           <  1:522650/139‑1 (MQ=255)

                                                                                                    tCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGACACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTggg                                >  2:327489/1‑139 (MQ=255)

                                                                                                      tGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCg                              <  2:241720/139‑1 (MQ=255)

                                                                                                       ggAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGa                             >  1:679999/1‑139 (MQ=255)

                                                                                                         aaGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGAtt                           >  2:89056/1‑139 (MQ=255)

                                                                                                            ccGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCa                        >  2:542513/1‑139 (MQ=255)

                                                                                                            ccGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCa                        >  2:704936/1‑139 (MQ=255)

                                                                                                            ccGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCa                        >  1:439789/1‑139 (MQ=255)

                                                                                                            ccGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACCGCAGTCTACGCCACAAACATGGCAACAGTCACTGTATGACCAATGCCCAGTTACTCGGCGATTGCa                        >  1:50075/1‑139 (MQ=255)

                                                                                                             cGTGTCTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAg                       <  2:797880/139‑1 (MQ=255)

                                                                                                                  cTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGtt                                                                                                                         >  1:423127/1‑36 (MQ=255)

                                                                                                                  cTG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGtt                                                                                                                         <  2:423127/36‑1 (MQ=255)

                                                                                                                   tG‑‑GTGTAGACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGa                 <  1:410411/139‑1 (MQ=255)

                                                                                                                    g‑‑gTGTAGACCATGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGAt                <  2:519351/139‑1 (MQ=255)

                                                                                                                            gACCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTAc          <  2:256637/139‑1 (MQ=255)

                                                                                                                             aCCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGAc                                                  <  2:715696/98‑1 (MQ=255)

                                                                                                                             aCCAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGAc                                                  >  1:715696/1‑98 (MQ=255)

                                                                                                                              ccAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACGAGGCAACAGGCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCa        <  1:79288/139‑1 (MQ=255)

                                                                                                                              ccAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCa        <  2:50075/139‑1 (MQ=255)

                                                                                                                              ccAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCa        <  1:285787/139‑1 (MQ=255)

                                                                                                                              ccAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCa        <  1:542513/139‑1 (MQ=255)

                                                                                                                               cAGGCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCAg       <  2:429972/139‑1 (MQ=255)

                                                                                                                                 ggCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAAt                                                                                                           >  2:235430/1‑37 (MQ=255)

                                                                                                                                 ggCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAAt                                                                                                           <  1:235430/37‑1 (MQ=255)

                                                                                                                                 ggCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCa        >  2:199/1‑136 (MQ=255)

                                                                                                                                 ggCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCa        <  1:199/136‑1 (MQ=255)

                                                                                                                                  gCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCaa                                                                 <  2:89436/78‑1 (MQ=255)

                                                                                                                                  gCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCaa                                                                 <  1:412077/78‑1 (MQ=255)

                                                                                                                                  gCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCaa                                                                 >  1:89436/1‑78 (MQ=255)

                                                                                                                                  gCACTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCaa                                                                 >  2:412077/1‑78 (MQ=255)

                                                                                                                                    aCTGGA‑TTGCTCTATCAGTTCGAGTTTTAACAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATTACTACCAGTTGta  <  1:539962/139‑1 (MQ=255)

GCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTG‑‑GTGTAGACCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCAGTTGTA  >  NC_000913/4447731‑4448000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A