Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I2 R1
|
777 |
59.2 |
2955938 |
92.5% |
2734242 |
106.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,158,538 |
C→T |
H17Y (CAT→TAT) |
oxyR → |
oxidative and nitrosative stress transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,158,538 | 0 | C | T | 100.0%
| 324.5
/ NA
| 99 | H17Y (CAT→TAT) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (54/45); total (54/45) |
AGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACC > NC_000913/4158409‑4158663
|
agtcagAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGc > 2:348878/1‑139 (MQ=255)
gAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCg > 2:1399967/1‑139 (MQ=255)
aaTGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCgg > 2:1189175/1‑139 (MQ=255)
tGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGAtt > 1:49087/1‑139 (MQ=255)
gATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTAtttt > 1:1279799/1‑116 (MQ=255)
gATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTAtttt < 2:1279799/116‑1 (MQ=255)
aTAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCAc > 2:1231894/1‑139 (MQ=255)
cGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTag < 1:1150582/139‑1 (MQ=255)
cGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTag < 2:956296/139‑1 (MQ=255)
cATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagccag > 2:556376/1‑139 (MQ=255)
tCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCtt > 1:715288/1‑139 (MQ=255)
tACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAg < 1:348878/139‑1 (MQ=255)
ccTATCGCCATGAACTATGGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTg < 1:866844/100‑1 (MQ=255)
ccTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTg > 2:866844/1‑100 (MQ=255)
ccTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCg > 1:1434299/1‑139 (MQ=255)
ccTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCg > 1:479913/1‑139 (MQ=255)
cTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagccagc < 2:465712/126‑1 (MQ=255)
cTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagccagc > 1:465712/1‑126 (MQ=255)
tATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCggg > 2:268774/1‑139 (MQ=255)
tATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCggg < 1:745131/139‑1 (MQ=255)
aTCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGc > 1:1203194/1‑139 (MQ=255)
tCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCa < 2:595318/139‑1 (MQ=255)
cGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTag < 2:85980/117‑1 (MQ=255)
cGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTag > 1:85980/1‑117 (MQ=255)
cGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCaa > 2:219494/1‑139 (MQ=255)
cGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCa > 2:1012051/1‑138 (MQ=255)
cGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCa < 1:1012051/138‑1 (MQ=255)
ccATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAAt > 2:386130/1‑139 (MQ=255)
cATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAAtt < 2:479913/139‑1 (MQ=255)
tGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCg < 2:132345/139‑1 (MQ=255)
aTCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCt > 2:698213/1‑139 (MQ=255)
cGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTgg < 2:1203194/139‑1 (MQ=255)
gCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTg > 2:829084/1‑91 (MQ=255)
gCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTg < 1:829084/91‑1 (MQ=255)
ggaggaTGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTc < 1:1238126/83‑1 (MQ=255)
ggaggaTGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTc > 2:1238126/1‑83 (MQ=255)
ggaggaTGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGc < 2:706207/139‑1 (MQ=255)
gaggaTGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCt < 1:219494/139‑1 (MQ=255)
gatggatAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTggg < 1:1399967/139‑1 (MQ=255)
tggatAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGt > 2:156714/1‑117 (MQ=255)
tggatAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGt < 1:156714/117‑1 (MQ=255)
ggatAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGt < 2:49087/139‑1 (MQ=255)
tGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCg > 2:1118653/1‑58 (MQ=255)
tGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCg < 1:1118653/58‑1 (MQ=255)
aaTATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTg > 1:496936/1‑71 (MQ=255)
aaTATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTg < 2:496936/71‑1 (MQ=255)
atTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTgg > 1:684128/1‑139 (MQ=255)
ttCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGa > 1:240628/1‑139 (MQ=255)
ttCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGa > 1:586616/1‑139 (MQ=255)
tCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAg < 2:715288/139‑1 (MQ=255)
tCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAg < 2:1434299/139‑1 (MQ=255)
gTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCg < 2:586616/139‑1 (MQ=255)
tGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCa > 1:1465470/1‑93 (MQ=255)
tGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCa < 2:1465470/93‑1 (MQ=255)
aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGc < 2:790886/90‑1 (MQ=255)
aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGc > 1:790886/1‑90 (MQ=255)
cTTGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCa > 1:405281/1‑139 (MQ=255)
ttGAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAg > 2:469491/1‑139 (MQ=255)
gAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCg < 2:653947/41‑1 (MQ=255)
gAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCg > 1:653947/1‑41 (MQ=255)
gAGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGcc > 2:30996/1‑139 (MQ=255)
aGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTag < 2:503885/64‑1 (MQ=255)
aGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTag > 1:503885/1‑64 (MQ=255)
aGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCt < 1:770333/97‑1 (MQ=255)
aGTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCt > 2:770333/1‑97 (MQ=255)
gTACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGt > 1:1201867/1‑139 (MQ=255)
tACCTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTa < 2:684128/139‑1 (MQ=255)
cTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCg < 1:801324/86‑1 (MQ=255)
cTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCg > 2:801324/1‑86 (MQ=255)
cTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTaa > 1:1102170/1‑89 (MQ=255)
cTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTaa < 2:1102170/89‑1 (MQ=255)
cTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCt > 2:9672/1‑92 (MQ=255)
cTGGTGGCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCt < 1:9672/92‑1 (MQ=255)
tggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgt < 2:240628/139‑1 (MQ=255)
ggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagc > 2:98570/1‑58 (MQ=255)
ggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagc < 1:98570/58‑1 (MQ=255)
ggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCt > 1:575983/1‑90 (MQ=255)
ggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCt < 2:575983/90‑1 (MQ=255)
ggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGTAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg > 2:875827/1‑139 (MQ=255)
ggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg > 2:1107593/1‑139 (MQ=255)
ggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg > 1:702968/1‑139 (MQ=255)
ggtggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg > 2:629550/1‑139 (MQ=255)
ggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGAtt < 1:374907/41‑1 (MQ=255)
ggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGAtt > 2:374907/1‑41 (MQ=255)
ggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTCAAGtgttg > 1:893375/1‑139 (MQ=255)
ggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttg > 2:1035388/1‑139 (MQ=255)
ggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttg > 2:904860/1‑139 (MQ=255)
ggCATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttg > 2:370474/1‑139 (MQ=255)
cATTGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTgttgtt < 1:556376/139‑1 (MQ=255)
tGGCTGAACACCGCTATTTTCGGCGTGCGGCAGAtt > 1:248967/1‑36 (MQ=255)
tGGCTGAACACCGCTATTTTCGGCGTGCGGCAGAtt < 2:248967/36‑1 (MQ=255)
tGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCa < 1:1430308/43‑1 (MQ=255)
tGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCa > 2:1430308/1‑43 (MQ=255)
tGGCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAc < 1:386130/139‑1 (MQ=255)
ggCTGAACACCGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAcc < 1:875827/139‑1 (MQ=255)
cGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagc > 2:1332287/1‑39 (MQ=255)
cGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagc < 1:1332287/39‑1 (MQ=255)
cGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAc > 2:1200079/1‑107 (MQ=255)
cGCTATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAc < 1:1200079/107‑1 (MQ=255)
|
AGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACC > NC_000913/4158409‑4158663
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
