Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
766 |
64.2 |
3232166 |
90.9% |
2938038 |
104.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,420,793 |
(G)6→7 |
coding (110/423 nt) |
ydaT → |
Rac prophage, uncharacterized protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,420,787 | 1 | . | G | 100.0%
| 174.5
/ NA
| 49 | Q35R (CAG→CGG) | ydaT | Rac prophage, uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (28/21); total (28/21) |
ACCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTG > NC_000913/1420656‑1420917
|
aCCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggggg > 1:213873/1‑138 (MQ=255)
tCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTg > 2:1247727/1‑139 (MQ=255)
tCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGACAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTg > 2:994645/1‑139 (MQ=255)
cAAGAGGCAAATGATACATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGc > 1:1078808/1‑139 (MQ=255)
gagGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCACTTACTCAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc < 2:1078808/139‑1 (MQ=255)
gCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTgg > 2:250672/1‑139 (MQ=255)
cAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGt > 2:1215429/1‑139 (MQ=255)
aaTGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTc < 2:213873/139‑1 (MQ=255)
ttCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCTAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCACTGGTTCCAGGc > 1:1520549/1‑139 (MQ=255)
tCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCa < 1:1247727/139‑1 (MQ=255)
tCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGa < 1:722712/139‑1 (MQ=255)
cacaTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcagcag > 1:741430/1‑139 (MQ=255)
acaTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGTATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa < 1:994645/139‑1 (MQ=255)
caTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGaa < 1:250672/139‑1 (MQ=255)
caTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGaa < 2:1160643/139‑1 (MQ=255)
tCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAata > 2:181151/1‑139 (MQ=255)
cGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGTAAg < 1:453605/116‑1 (MQ=255)
cGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGTAAg > 2:453605/1‑116 (MQ=255)
tgttgtTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcag < 2:137322/123‑1 (MQ=255)
tgttgtTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcag > 1:137322/1‑123 (MQ=255)
tttGCCCTAGCAGCCGAAAAAGGCCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgttgg > 1:1572678/1‑139 (MQ=255)
ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGa > 2:13506/1‑100 (MQ=255)
ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGa < 1:13506/100‑1 (MQ=255)
ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGaa < 2:741430/139‑1 (MQ=255)
tAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAAtt > 2:1346452/1‑77 (MQ=255)
tAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAAtt < 1:1346452/77‑1 (MQ=255)
gcaggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGGAAGGTGAAACGAAAACGCa > 1:1008966/1‑139 (MQ=255)
gcaggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCa > 1:1271339/1‑139 (MQ=255)
ggTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCa < 1:564507/69‑1 (MQ=255)
ggTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCa > 2:564507/1‑69 (MQ=255)
ccAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTc < 2:1106237/58‑1 (MQ=255)
ccAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTc < 2:217979/58‑1 (MQ=255)
ccAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTc > 1:1106237/1‑58 (MQ=255)
ccAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTc > 1:217979/1‑58 (MQ=255)
ccAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTc > 1:384619/1‑139 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATGGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGaa > 2:1029659/1‑139 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGACGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt > 2:250287/1‑74 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGACGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt < 1:250287/74‑1 (MQ=255)
gCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGaaaaaa < 2:464327/131‑1 (MQ=255)
gCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGaaaaaa > 1:464327/1‑131 (MQ=255)
aagaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAg > 2:492739/1‑139 (MQ=255)
cTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTg > 1:1437546/1‑139 (MQ=255)
gcgcCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGc < 2:1026331/38‑1 (MQ=255)
gcgcCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGc > 1:1026331/1‑38 (MQ=37)
gcgcCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGAc < 1:530713/44‑1 (MQ=255)
gcgcCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGAc > 2:530713/1‑44 (MQ=38)
gcgcCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCa < 2:422336/100‑1 (MQ=255)
gcgcCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCa > 1:422336/1‑100 (MQ=255)
gcgcCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCa > 1:704105/1‑115 (MQ=255)
gcgcCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCa < 2:704105/115‑1 (MQ=255)
|
ACCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTG > NC_000913/1420656‑1420917
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
