Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I2 R1
|
765 |
53.2 |
2691310 |
93.4% |
2513683 |
103.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,420,793 |
(G)6→7 |
coding (110/423 nt) |
ydaT → |
Rac prophage, uncharacterized protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,420,787 | 1 | . | G | 100.0%
| 166.9
/ NA
| 46 | Q35R (CAG→CGG) | ydaT | Rac prophage, uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (23/23); total (23/23) |
ACCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAG > NC_000913/1420656‑1420899
|
aCCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggggg > 2:684295/1‑138 (MQ=255)
cTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑gggggggcg > 1:1254835/1‑136 (MQ=255)
tCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTg > 1:1342844/1‑139 (MQ=255)
cAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGc > 2:888833/1‑139 (MQ=255)
aaGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcc > 2:19936/1‑139 (MQ=255)
gagGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc < 1:888833/139‑1 (MQ=255)
aaTGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTc < 1:684295/139‑1 (MQ=255)
cATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt < 1:19936/139‑1 (MQ=255)
acaTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa < 2:1111833/139‑1 (MQ=255)
aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCa > 1:1193447/1‑116 (MQ=255)
aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCa < 2:1193447/116‑1 (MQ=255)
aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAat > 1:976244/1‑139 (MQ=255)
ttgttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt < 2:976244/139‑1 (MQ=255)
gttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt > 1:778833/1‑137 (MQ=255)
gttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTAGTTCCAGGCAAGGACGGGAACAATCAGCAGAATATCTATCACCgt < 2:778833/137‑1 (MQ=255)
tttGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgtt > 1:877110/1‑137 (MQ=255)
tttGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgtt < 2:877110/137‑1 (MQ=255)
cccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGa < 1:532885/139‑1 (MQ=255)
ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCTAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcag < 2:585281/113‑1 (MQ=255)
ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcag > 1:585281/1‑113 (MQ=255)
ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGaa > 1:728538/1‑139 (MQ=255)
cGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGa < 2:444835/91‑1 (MQ=255)
cGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGa > 1:444835/1‑91 (MQ=255)
gcaggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCa > 1:2379/1‑139 (MQ=255)
ggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGc > 2:31696/1‑74 (MQ=255)
ggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGc < 1:31696/74‑1 (MQ=255)
ggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAag < 1:1055710/139‑1 (MQ=255)
ggTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt > 1:29257/1‑104 (MQ=255)
ggTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt < 2:29257/104‑1 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc > 2:731845/1‑48 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc < 1:731845/48‑1 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc > 1:469906/1‑48 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc < 2:469906/48‑1 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt < 2:609879/74‑1 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt > 1:609879/1‑74 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGaa < 2:1142888/115‑1 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGaa > 1:1142888/1‑115 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGaa > 1:894185/1‑139 (MQ=255)
tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGaa > 2:88234/1‑139 (MQ=255)
gCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAg < 2:728538/139‑1 (MQ=255)
ttACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgttggttg > 2:1024799/1‑96 (MQ=255)
ttACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgttggttg < 1:1024799/96‑1 (MQ=255)
aagaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCaa < 2:273089/111‑1 (MQ=255)
aagaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCaa > 1:273089/1‑111 (MQ=255)
gaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGa > 2:179340/1‑56 (MQ=255)
gaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGa < 1:179340/56‑1 (MQ=255)
atCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa > 1:637603/1‑64 (MQ=255)
atCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa < 2:637603/64‑1 (MQ=255)
|
ACCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAG > NC_000913/1420656‑1420899
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
