Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I2 R1	766	64.2	3232166	90.9%	2938038	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,012,700	C→T	105 (TAG→TAA)	fliE ←	flagellar basal‑body component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,012,700	0	C	T	100.0%	250.3 / NA	77	105 (TAG→TAA)	fliE	flagellar basal‑body component
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (38/39); total (38/39)

TTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCG  >  NC_000913/2012564‑2012832

ttATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGGCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTa                                                                                                                                    >  2:959348/1‑139 (MQ=255)

ttATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTa                                                                                                                                    <  1:1253855/139‑1 (MQ=255)

  aTCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTaca                                                                                                                                  >  2:1590899/1‑139 (MQ=255)

               aTCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     >  2:1448902/1‑139 (MQ=255)

               aTCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     >  1:354966/1‑139 (MQ=255)

                tCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcatc                                                                                                                    >  2:714518/1‑139 (MQ=255)

                 cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcatca                                                                                                                   >  2:368149/1‑139 (MQ=255)

                 cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcatca                                                                                                                   >  1:709980/1‑139 (MQ=255)

                 cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcatca                                                                                                                   <  2:1235566/139‑1 (MQ=255)

                 cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtca                                                                                                                      >  1:1395357/1‑136 (MQ=255)

                 cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtca                                                                                                                      <  2:1395357/136‑1 (MQ=255)

                   tGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGc                                                                                                                             <  2:1133354/127‑1 (MQ=255)

                   tGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGc                                                                                                                             >  1:1133354/1‑127 (MQ=255)

                   tGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACt                                                                                                                 >  1:835496/1‑139 (MQ=255)

                         gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     <  2:465336/129‑1 (MQ=255)

                         gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     >  1:465336/1‑129 (MQ=255)

                         gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGa                                                                                                           >  1:249388/1‑139 (MQ=255)

                          cAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGAt                                                                                                          >  1:779514/1‑139 (MQ=255)

                                 cGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATAcgccgc                                                                                                   <  1:368149/139‑1 (MQ=255)

                                   ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 <  2:841603/139‑1 (MQ=255)

                                   ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 >  1:94084/1‑139 (MQ=255)

                                    tCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                <  2:709980/139‑1 (MQ=255)

                                    tCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                <  1:714518/139‑1 (MQ=255)

                                      aGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                               <  2:826672/139‑1 (MQ=255)

                                        gATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGc                                                                                            <  1:1448902/139‑1 (MQ=255)

                                         aTCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCt                                                                                           <  1:1538788/139‑1 (MQ=255)

                                         aTCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCt                                                                                           <  2:94084/139‑1 (MQ=255)

                                           cAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCtta                                                                                         <  2:145695/139‑1 (MQ=255)

                                                aTCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTTCTGATACGCCGCCACCAGCTTATTACg                                                                                    <  1:959348/139‑1 (MQ=255)

                                                aTCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACg                                                                                    <  2:249388/139‑1 (MQ=255)

                                                      tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCt                                                                                                                        >  1:1101826/1‑97 (MQ=255)

                                                      tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCt                                                                                                                        <  2:1101826/97‑1 (MQ=255)

                                                      tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                <  1:1114780/121‑1 (MQ=255)

                                                      tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                >  2:1114780/1‑121 (MQ=255)

                                                         aaaCCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAt                                                                           >  1:205615/1‑139 (MQ=255)

                                                           aCCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     <  1:508599/95‑1 (MQ=255)

                                                           aCCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     >  2:508599/1‑95 (MQ=255)

                                                               gAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAt                                                                     <  1:1590899/139‑1 (MQ=255)

                                                                                ccccATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCa                                                                >  1:315660/1‑127 (MQ=255)

                                                                                ccccATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCa                                                                <  2:315660/127‑1 (MQ=255)

                                                                                         tGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTg                                                                              >  1:63021/1‑104 (MQ=255)

                                                                                         tGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTg                                                                              <  2:63021/104‑1 (MQ=255)

                                                                                          gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                               <  2:532873/86‑1 (MQ=255)

                                                                                          gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                               >  1:532873/1‑86 (MQ=255)

                                                                                           ccccACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                         <  1:255738/139‑1 (MQ=255)

                                                                                             ccACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                       >  2:162579/1‑139 (MQ=255)

                                                                                               aCGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGCTACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTg                                                                  >  2:264854/1‑110 (MQ=255)

                                                                                               aCGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATc                                                                          <  2:104629/102‑1 (MQ=255)

                                                                                               aCGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATc                                                                          >  1:104629/1‑102 (MQ=255)

                                                                                               aCGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTg                                                                  <  1:264854/110‑1 (MQ=255)

                                                                                                cgcgGTGAGATGGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                    <  2:1044915/139‑1 (MQ=255)

                                                                                                cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCa                                                                                                                            >  2:899583/1‑51 (MQ=255)

                                                                                                cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCa                                                                                                                            <  1:899583/51‑1 (MQ=255)

                                                                                                cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                         <  1:419167/134‑1 (MQ=255)

                                                                                                cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                         >  2:419167/1‑134 (MQ=255)

                                                                                                cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCa                                           <  1:277130/132‑1 (MQ=255)

                                                                                                cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCa                                           >  2:277130/1‑132 (MQ=255)

                                                                                                cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                    >  1:910358/1‑139 (MQ=255)

                                                                                                     tGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGc                                                                                                                         >  2:716168/1‑49 (MQ=255)

                                                                                                     tGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGc                                                                                                                         <  1:716168/49‑1 (MQ=255)

                                                                                                     tGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                       >  1:387276/1‑131 (MQ=255)

                                                                                                     tGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                       <  2:387276/131‑1 (MQ=255)

                                                                                                       agaTCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca                             <  2:354966/139‑1 (MQ=255)

                                                                                                                       acaacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 <  1:1550549/55‑1 (MQ=255)

                                                                                                                       acaacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 >  2:1550549/1‑55 (MQ=255)

                                                                                                                        caacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 >  2:742857/1‑54 (MQ=255)

                                                                                                                        caacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 <  1:742857/54‑1 (MQ=255)

                                                                                                                        caacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgcc            >  1:797656/1‑139 (MQ=255)

                                                                                                                        caacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgcc            >  1:632190/1‑139 (MQ=255)

                                                                                                                          acaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCgg          >  2:905366/1‑139 (MQ=255)

                                                                                                                            aGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacg              >  1:157407/1‑133 (MQ=255)

                                                                                                                            aGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacg              <  2:157407/133‑1 (MQ=255)

                                                                                                                              gTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCttatta                                                                                      >  2:760628/1‑59 (MQ=255)

                                                                                                                              gTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCttatta                                                                                      <  1:760628/59‑1 (MQ=255)

                                                                                                                              gTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCttt                                                <  2:678989/97‑1 (MQ=255)

                                                                                                                              gTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCttt                                                >  1:678989/1‑97 (MQ=255)

                                                                                                                                  c‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCg  <  2:632190/139‑1 (MQ=255)

TTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCG  >  NC_000913/2012564‑2012832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A