Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
766 |
64.2 |
3232166 |
90.9% |
2938038 |
104.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,600,609 |
(C)5→7 |
coding (132/471 nt) |
bcp → |
peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,600,604 | 1 | . | C | 100.0%
| 152.3
/ NA
| 44 | T43P (ACC→CCC) | bcp | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (23/21); total (23/21) |
| * | NC_000913 | 2,600,604 | 2 | . | C | 100.0%
| 154.1
/ NA
| 44 | T43P (ACC→CCC) | bcp | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (23/21); total (23/21) |
AGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑CCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAGA > NC_000913/2600469‑2600731
||
aGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑ccc > 2:175494/1‑139 (MQ=255)
aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGTGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccg > 1:965694/1‑136 (MQ=255)
aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccg > 1:108658/1‑136 (MQ=255)
aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccg > 1:1329363/1‑136 (MQ=255)
gTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccgg < 2:1329363/139‑5 (MQ=255)
gTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccgg < 2:108658/139‑5 (MQ=255)
tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGGCGTAGAACAAGTTAATTTGACCGACTGCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccggctgt < 1:1065834/139‑9 (MQ=255)
aaTCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTAc > 2:363639/1‑139 (MQ=255)
cACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTa < 2:135660/139‑1 (MQ=255)
tGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCt < 1:363639/139‑1 (MQ=255)
atatCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccgg < 2:529618/114‑5 (MQ=255)
atatCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccgg > 1:529618/1‑110 (MQ=255)
cGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTAcgcg > 2:1368129/1‑139 (MQ=255)
gCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGa < 1:58662/139‑1 (MQ=255)
gCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGa < 1:175494/139‑1 (MQ=255)
gCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGa < 1:1368129/139‑1 (MQ=255)
ccGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTAcgcg < 2:780197/135‑1 (MQ=255)
ccGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTAcgcg > 1:780197/1‑135 (MQ=255)
gACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccgg < 2:427428/82‑5 (MQ=255)
gACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccgg > 1:427428/1‑78 (MQ=255)
cGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑c < 2:9367/72‑1 (MQ=255)
cGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑c > 1:9367/1‑72 (MQ=255)
agaACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTg > 1:802156/1‑139 (MQ=255)
aCAAGTTAATTTGACCGACTTCCAGGGATAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtg < 2:965694/139‑1 (MQ=255)
aaGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccc < 1:1413412/67‑1 (MQ=255)
aaGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccc > 2:1413412/1‑67 (MQ=255)
aGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGc > 1:1558957/1‑139 (MQ=255)
gTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCt > 1:1237594/1‑139 (MQ=255)
aaTTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTggg > 1:224467/1‑139 (MQ=255)
aaTTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccgg < 1:1404579/67‑5 (MQ=255)
aaTTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑cccccccgg > 2:1404579/1‑63 (MQ=255)
aCTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCt < 1:1389885/80‑1 (MQ=255)
aCTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCt > 2:1389885/1‑80 (MQ=255)
cAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATaa < 2:224467/139‑1 (MQ=255)
aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCt > 1:446229/1‑68 (MQ=255)
aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCt < 2:446229/68‑1 (MQ=255)
aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑ccccc < 1:1382519/41‑1 (MQ=255)
aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑ccccc > 2:1382519/1‑41 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCg < 2:1198333/63‑1 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCg > 1:1198333/1‑63 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGGGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATaa < 2:220825/130‑1 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGGGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATaa > 1:220825/1‑130 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGc < 2:1113751/97‑1 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGc > 1:1113751/1‑97 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg > 2:351312/1‑110 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg < 1:351312/110‑1 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGaaaa > 2:981766/1‑139 (MQ=255)
cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGaaaa > 1:997823/1‑139 (MQ=255)
gtgtTCTGGTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGaaaaa < 1:981766/139‑1 (MQ=255)
gTTTATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCg > 2:681411/1‑139 (MQ=255)
tttATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTa < 2:1106298/43‑1 (MQ=255)
tttATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTa > 1:1106298/1‑43 (MQ=255)
tttATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTg < 2:606024/103‑1 (MQ=255)
tttATTTCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTg > 1:606024/1‑103 (MQ=255)
ttCTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGc < 2:802156/139‑1 (MQ=255)
cTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAAc > 2:1463894/1‑115 (MQ=255)
cTACCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAAc < 1:1463894/115‑1 (MQ=255)
aCCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTg > 2:1262996/1‑94 (MQ=255)
aCCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTg < 1:1262996/94‑1 (MQ=255)
aCCCGAAAGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGaa > 2:58813/1‑139 (MQ=255)
aaaGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGaa < 1:908952/134‑1 (MQ=255)
aaaGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGaa > 2:908952/1‑134 (MQ=255)
aaaGCCATGACCCCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAaga > 2:259064/1‑139 (MQ=255)
||
AGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑‑CCCCCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAGA > NC_000913/2600469‑2600731
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
