Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I2 R1	766	64.2	3232166	90.9%	2938038	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,760,667	G→A	D41N (GAC→AAC)	yfjJ →	CP4‑57 prophage, uncharacterized protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,760,667	0	G	A	100.0%	263.7 / NA	81	D41N (GAC→AAC)	yfjJ	CP4‑57 prophage, uncharacterized protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (42/39); total (42/39)

TATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATGACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACT  >  NC_000913/2760544‑2760802

tataTGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAg                                                                                                                          >  2:983362/1‑139 (MQ=255)

tataTGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAg                                                                                                                          <  2:747453/139‑1 (MQ=255)

tataTGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAg                                                                                                                          >  1:1580644/1‑139 (MQ=255)

tataTGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAg                                                                                                                          >  2:455394/1‑139 (MQ=255)

     gACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     <  2:680303/139‑1 (MQ=255)

     gACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     >  2:576257/1‑139 (MQ=255)

     gACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     <  2:1171467/139‑1 (MQ=255)

     gACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     >  2:320492/1‑139 (MQ=255)

       cATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGCTAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAatat                                                                                                                   >  1:1417396/1‑139 (MQ=255)

       cATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTACTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAatat                                                                                                                   >  2:811515/1‑139 (MQ=255)

         tACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATgg                                                                                                                 <  1:810873/139‑1 (MQ=255)

          aCGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGa                                                                                                                >  1:365886/1‑139 (MQ=255)

              tAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAAc                                                                                                            >  1:485544/1‑139 (MQ=255)

                 tGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     <  2:276856/127‑1 (MQ=255)

                 tGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     >  1:276856/1‑127 (MQ=255)

                   aaTTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCAtt                                                                                                       >  2:318866/1‑139 (MQ=255)

                    aTTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           <  2:412707/118‑1 (MQ=255)

                    aTTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           >  1:412707/1‑118 (MQ=255)

                    aTTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           <  2:684206/118‑1 (MQ=255)

                    aTTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           >  1:684206/1‑118 (MQ=255)

                       cGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:320492/139‑1 (MQ=255)

                            cacaTGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAcc                                                                                              <  2:151370/139‑1 (MQ=255)

                             acaTGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAccc                                                                                             <  1:983362/139‑1 (MQ=255)

                               aTGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAg                                                                                           >  1:858650/1‑139 (MQ=255)

                                       cTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  2:450858/1‑123 (MQ=255)

                                       cTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:450858/123‑1 (MQ=255)

                                        tataTCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  2:365886/139‑1 (MQ=255)

                                        tataTCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  2:858650/139‑1 (MQ=255)

                                        tataTCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCGTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACATAAAATATGGATAACCCATTCTTTCAACCCTGGGTTGActc                                                                                  <  1:318866/139‑1 (MQ=255)

                                               ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     >  1:840002/1‑97 (MQ=255)

                                               ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     <  2:840002/97‑1 (MQ=255)

                                               ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCt                                                                           >  2:63046/1‑139 (MQ=255)

                                                   aGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  2:485544/139‑1 (MQ=255)

                                                   aGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  1:600804/139‑1 (MQ=255)

                                                   aGAATCAAACAGGTTATTGATGACTCCCTAAACGAACACCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  1:1613192/139‑1 (MQ=255)

                                                     aaTCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATAtct                                                                     <  1:455394/139‑1 (MQ=255)

                                                          aaCAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAcc                                                                                              >  1:1120492/1‑109 (MQ=255)

                                                          aaCAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAcc                                                                                              <  2:1120492/109‑1 (MQ=255)

                                                                   ttGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGc                                                       >  1:406208/1‑139 (MQ=255)

                                                                         aCTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAAccc                                                                                                          >  1:912876/1‑82 (MQ=255)

                                                                         aCTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAAccc                                                                                                          <  2:912876/82‑1 (MQ=255)

                                                                         aCTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  1:1325939/1‑89 (MQ=255)

                                                                         aCTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  2:1325939/89‑1 (MQ=255)

                                                                         aCTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGa                                                                                     >  2:882605/1‑103 (MQ=255)

                                                                         aCTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGa                                                                                     <  1:882605/103‑1 (MQ=255)

                                                                           tCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaag                                               >  2:517723/1‑139 (MQ=255)

                                                                            cccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagc                                              <  2:1580644/139‑1 (MQ=255)

                                                                             ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaatgca                                             >  2:1040725/1‑139 (MQ=255)

                                                                             ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             <  1:910469/139‑1 (MQ=255)

                                                                             ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             >  2:910469/1‑139 (MQ=255)

                                                                             ccTAAACGAACATCTTAACTCAATGATTCCACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCTATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             <  1:1040725/139‑1 (MQ=255)

                                                                                     aaCATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  2:235086/1‑77 (MQ=255)

                                                                                     aaCATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:235086/77‑1 (MQ=255)

                                                                                      aCATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTaaa                                    <  1:576257/139‑1 (MQ=255)

                                                                                            tAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  >  2:807029/1‑87 (MQ=255)

                                                                                            tAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  1:807029/87‑1 (MQ=255)

                                                                                            tAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTg                                                                             <  1:12116/92‑1 (MQ=255)

                                                                                            tAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTg                                                                             >  2:12116/1‑92 (MQ=255)

                                                                                            tAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGAt                              <  1:63046/139‑1 (MQ=255)

                                                                                                 cAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCa                         <  1:811515/139‑1 (MQ=255)

                                                                                                  aaTGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       >  2:641089/1‑92 (MQ=255)

                                                                                                  aaTGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  1:641089/92‑1 (MQ=255)

                                                                                                  aaTGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCat                        >  2:313842/1‑139 (MQ=255)

                                                                                                    tGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:545243/62‑1 (MQ=255)

                                                                                                    tGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  2:545243/1‑62 (MQ=255)

                                                                                                    tGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCatat                      >  1:352860/1‑139 (MQ=255)

                                                                                                    tGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCatat                      >  1:543233/1‑139 (MQ=255)

                                                                                                            cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTc              >  2:530673/1‑139 (MQ=255)

                                                                                                            cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTc              >  2:485629/1‑139 (MQ=255)

                                                                                                            cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTc              <  2:352860/139‑1 (MQ=255)

                                                                                                              tgtTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  1:311629/1‑52 (MQ=255)

                                                                                                              tgtTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  2:311629/52‑1 (MQ=255)

                                                                                                                ttGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACg          >  1:357921/1‑139 (MQ=255)

                                                                                                                ttGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACg          >  1:919535/1‑139 (MQ=255)

                                                                                                                  gATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGa        >  2:102189/1‑139 (MQ=255)

                                                                                                                     cTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAg     <  1:313842/139‑1 (MQ=255)

                                                                                                                        cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  2:776064/59‑1 (MQ=255)

                                                                                                                        cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  >  1:776064/1‑59 (MQ=255)

                                                                                                                        cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATAtct                                                                     <  1:1477446/72‑1 (MQ=255)

                                                                                                                        cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATAtct                                                                     >  2:1477446/1‑72 (MQ=255)

                                                                                                                        cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACt  >  1:246341/1‑139 (MQ=255)

TATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATGACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACT  >  NC_000913/2760544‑2760802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A