Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F1 I1 R1 765 39.6 1867486 94.4% 1762906 108.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,760,667 G→A D41N (GAC→AAC)  yfjJ → CP4‑57 prophage, uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,760,6670GA100.0% 286.4 / NA 88D41N (GAC→AAC) yfjJCP4‑57 prophage, uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (48/40);  total (48/40)

TTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATGACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACT  >  NC_000913/2760531‑2760802
                                                                                                                                        |                                                                                                                                       
ttGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAAc                                                                                                                                       >  1:422405/1‑139 (MQ=255)
        gATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGa                                                                                                                               >  2:427121/1‑139 (MQ=255)
           aCTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGCTGATCTGCATAACCCACTTGATAc                                                                                                                            <  1:568411/139‑1 (MQ=255)
            cTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           <  1:569036/139‑1 (MQ=255)
                  gACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGAt                                                                                                                              >  2:133205/1‑130 (MQ=255)
                  gACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGAt                                                                                                                              <  1:133205/130‑1 (MQ=255)
                    cATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCaa                                                                                                                                   >  1:898268/1‑123 (MQ=255)
                    cATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCaa                                                                                                                                   <  2:898268/123‑1 (MQ=255)
                    cATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAatat                                                                                                                   >  1:600553/1‑139 (MQ=255)
                      tACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATgg                                                                                                                 >  1:478158/1‑139 (MQ=255)
                       aCGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     >  2:293294/1‑134 (MQ=255)
                       aCGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     <  1:293294/134‑1 (MQ=255)
                       aCGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTATACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGa                                                                                                                >  2:711186/1‑139 (MQ=255)
                       aCGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAAACTAACAGGTTATTGATGACTCCCTACACGAACATCTTAACTCTATGACACTACGTGTTGAACAGCATAACCCAATTGATACAGAAAATATGGa                                                                                                                >  2:179186/1‑139 (MQ=255)
                         gATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATa                                                                                                              >  2:723979/1‑139 (MQ=255)
                                aaTTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAAc                                                                                                                                       >  1:351882/1‑107 (MQ=255)
                                aaTTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCAtt                                                                                                       >  1:666999/1‑139 (MQ=255)
                                    cGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:140170/139‑1 (MQ=255)
                                    cGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:112200/139‑1 (MQ=255)
                                        tCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACAGCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAc                                                                                               <  2:666999/139‑1 (MQ=255)
                                          acaTGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAccc                                                                                             <  1:427121/139‑1 (MQ=255)
                                                aTCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGtt                                                                                       <  1:882383/139‑1 (MQ=255)
                                                 tCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTg                                                                                      >  1:570372/1‑139 (MQ=255)
                                                  cccTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGa                                                                                     <  1:123773/139‑1 (MQ=255)
                                                  cccTATATCGGGATAGAATCAAACAGGTTATTGATGACTACCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGAGACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGa                                                                                     <  2:598446/139‑1 (MQ=255)
                                                      atatCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  2:597117/121‑1 (MQ=255)
                                                      atatCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  1:597117/1‑121 (MQ=255)
                                                      atatCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActct                                                                                 >  2:415813/1‑139 (MQ=255)
                                                       tatCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTg                                                                                >  1:513508/1‑139 (MQ=255)
                                                       tatCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTg                                                                                <  2:228662/139‑1 (MQ=255)
                                                       tatCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTg                                                                                <  2:570372/139‑1 (MQ=255)
                                                          cGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  1:31576/1‑117 (MQ=255)
                                                          cGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  2:31576/117‑1 (MQ=255)
                                                          cGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  2:140639/1‑117 (MQ=255)
                                                          cGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:140639/117‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAAc                                                                                                                                       >  2:646529/1‑79 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAAt                                                                                                                                  <  1:154437/84‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAAt                                                                                                                                  >  2:154437/1‑84 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGa                                                                                                                         <  1:709517/93‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGa                                                                                                                         >  2:709517/1‑93 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAccc                                                                                             <  1:718288/121‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAccc                                                                                             >  2:718288/1‑121 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  1:258642/132‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  >  2:258642/1‑132 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTg                                                                                <  1:423359/134‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTg                                                                                >  2:423359/1‑134 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCt                                                                           >  1:805199/1‑139 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATAGGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCt                                                                           >  2:585993/1‑139 (MQ=255)
                                                             gATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCta                                                                          >  1:346714/1‑139 (MQ=255)
                                                                aGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  2:765921/139‑1 (MQ=255)
                                                                aGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  1:585993/139‑1 (MQ=255)
                                                                       aaCAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  1:436129/1‑104 (MQ=255)
                                                                       aaCAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  2:436129/104‑1 (MQ=255)
                                                                           ggTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTAcc                                                            <  2:125917/139‑1 (MQ=255)
                                                                            gTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATgg                                                                                                                 >  1:931582/1‑85 (MQ=255)
                                                                            gTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATgg                                                                                                                 <  2:931582/85‑1 (MQ=255)
                                                                                      aCTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGtt                                                    <  1:88107/136‑1 (MQ=255)
                                                                                      aCTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGtt                                                    >  2:88107/1‑136 (MQ=255)
                                                                                       cTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           <  2:505561/64‑1 (MQ=255)
                                                                                       cTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           >  1:505561/1‑64 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       >  1:92206/1‑113 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  2:92206/113‑1 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             >  1:803494/1‑139 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGACAACCCACTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             >  2:133420/1‑139 (MQ=255)
                                                                                             aaaCGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagcaaag                                          >  1:84380/1‑139 (MQ=255)
                                                                                                           aCTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  2:507380/85‑1 (MQ=255)
                                                                                                           aCTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  >  1:507380/1‑85 (MQ=255)
                                                                                                               aaTGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGAt                              <  1:671616/133‑1 (MQ=255)
                                                                                                               aaTGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGAt                              >  2:671616/1‑133 (MQ=255)
                                                                                                                aTGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagc                                              >  2:189043/1‑116 (MQ=255)
                                                                                                                aTGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagc                                              <  1:189043/116‑1 (MQ=255)
                                                                                                                         cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAccc                                                                                             >  2:895743/1‑60 (MQ=255)
                                                                                                                         cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAccc                                                                                             <  1:895743/60‑1 (MQ=255)
                                                                                                                         cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGAt                              <  2:340059/123‑1 (MQ=255)
                                                                                                                         cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGAt                              >  1:340059/1‑123 (MQ=255)
                                                                                                                             ttGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  1:137927/67‑1 (MQ=255)
                                                                                                                             ttGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  >  2:137927/1‑67 (MQ=255)
                                                                                                                                aTCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  2:727009/75‑1 (MQ=255)
                                                                                                                                aTCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       >  1:727009/1‑75 (MQ=255)
                                                                                                                                 tCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGaaa      >  2:149547/1‑139 (MQ=255)
                                                                                                                                  cTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             >  1:206230/1‑99 (MQ=255)
                                                                                                                                  cTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             <  2:206230/99‑1 (MQ=255)
                                                                                                                                  cTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAg     >  1:448516/1‑139 (MQ=255)
                                                                                                                                   tGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAATAGCAAAGCTTaaa                                    <  2:623794/107‑1 (MQ=255)
                                                                                                                                   tGCATAACCAAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTaaa                                    >  1:623794/1‑107 (MQ=255)
                                                                                                                                     cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       >  2:504463/1‑70 (MQ=255)
                                                                                                                                     cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  1:504463/70‑1 (MQ=255)
                                                                                                                                     cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACt  >  1:850177/1‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATGACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACT  >  NC_000913/2760531‑2760802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A