Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F1 I1 R1 776 60.0 3074904 90.1% 2770488 104.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,760,667 G→A D41N (GAC→AAC)  yfjJ → CP4‑57 prophage, uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,760,6670GA100.0% 248.8 / NA 77D41N (GAC→AAC) yfjJCP4‑57 prophage, uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (39/38);  total (39/38)

TTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATGACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACT  >  NC_000913/2760531‑2760802
                                                                                                                                        |                                                                                                                                       
ttGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAAc                                                                                                                                       >  1:321742/1‑139 (MQ=255)
ttGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAAc                                                                                                                                       <  2:418246/139‑1 (MQ=255)
        gATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACA‑GTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGAt                                                                                                                              >  2:1133741/1‑139 (MQ=255)
          tACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATa                                                                                                                             <  1:946828/139‑1 (MQ=255)
                  gACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     >  2:1483088/1‑139 (MQ=255)
                  gACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAat                                                                                                                     >  2:446501/1‑139 (MQ=255)
                    cATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAatat                                                                                                                   >  2:908063/1‑139 (MQ=255)
                    cATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAatat                                                                                                                   >  1:825563/1‑139 (MQ=255)
                      tACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATgg                                                                                                                 >  2:1249806/1‑139 (MQ=255)
                      tACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATgg                                                                                                                 >  2:1308788/1‑139 (MQ=255)
                       aCGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGa                                                                                                                >  2:328739/1‑139 (MQ=255)
                       aCGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGa                                                                                                                >  2:1191344/1‑139 (MQ=255)
                       aCGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGa                                                                                                                >  2:67005/1‑139 (MQ=255)
                         gATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATAc                                                                                                                            >  2:724234/1‑125 (MQ=255)
                         gATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATAc                                                                                                                            <  1:724234/125‑1 (MQ=255)
                              tGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGa                                                                                                                         <  1:1343897/123‑1 (MQ=255)
                              tGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGa                                                                                                                         >  2:1343897/1‑123 (MQ=255)
                              tGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCa                                                                                                         >  1:753793/1‑139 (MQ=255)
                                    cGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCACTTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  2:141960/139‑1 (MQ=255)
                                    cGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:864165/139‑1 (MQ=255)
                                    cGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  1:128246/139‑1 (MQ=255)
                                        tCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   >  1:734331/1‑135 (MQ=255)
                                        tCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCttt                                                                                                   <  2:734331/135‑1 (MQ=255)
                                            aTGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAg                                                                                           >  2:307214/1‑139 (MQ=255)
                                            aTGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAg                                                                                           >  1:1261556/1‑139 (MQ=255)
                                               tATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGt                                                                                        <  1:131816/139‑1 (MQ=255)
                                                aTCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGtt                                                                                       <  2:80795/139‑1 (MQ=255)
                                                  cccTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGa                                                                                     <  1:1307205/139‑1 (MQ=255)
                                                    cTATATCGGGATAGAATCAAACA‑GTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  1:1133741/139‑1 (MQ=255)
                                                     tataTCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  1:307214/139‑1 (MQ=255)
                                                     tataTCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  2:1261556/139‑1 (MQ=255)
                                                      atatCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActct                                                                                 >  1:429596/1‑139 (MQ=255)
                                                      atatCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActct                                                                                 >  1:29850/1‑139 (MQ=255)
                                                          cGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTg                                                                             <  1:1249806/139‑1 (MQ=255)
                                                          cGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTg                                                                             <  1:1191344/139‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAccc                                                                                             <  1:1126856/121‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAAccc                                                                                             >  2:1126856/1‑121 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGt                                                                                        <  1:853122/126‑1 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGt                                                                                        >  2:853122/1‑126 (MQ=255)
                                                            ggATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCt                                                                           >  2:130968/1‑139 (MQ=255)
                                                                aGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  1:288844/139‑1 (MQ=255)
                                                                aGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  2:71871/139‑1 (MQ=255)
                                                                aGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTatat                                                                       <  2:321742/139‑1 (MQ=255)
                                                                  aaTCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATAtct                                                                     <  2:445870/139‑1 (MQ=255)
                                                                            gTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCa                                                           >  2:629783/1‑139 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           >  1:1472482/1‑61 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACa                                                                                                                           <  2:1472482/61‑1 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATaa                                                                                                             >  2:513543/1‑75 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATaa                                                                                                             <  1:513543/75‑1 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCa                                                                                                         >  1:1087203/1‑79 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             <  1:629783/139‑1 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             >  1:1088906/1‑139 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             <  1:908063/139‑1 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagca                                             >  1:381562/1‑139 (MQ=255)
                                                                                          ccTAAACGAACATCTTAACTCAATGATTCTACGTATTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCa                                                                                                         <  2:1087203/79‑1 (MQ=255)
                                                                                              aaCGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGTCTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAaaagcaaagc                                         <  2:1088906/139‑1 (MQ=255)
                                                                                                  aaCATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTaa                                     >  2:716741/1‑139 (MQ=255)
                                                                                                  aaCATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTa                                      >  2:621112/1‑138 (MQ=255)
                                                                                                  aaCATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTa                                      <  1:621112/138‑1 (MQ=255)
                                                                                                    cATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCg                                                                   <  1:1064313/107‑1 (MQ=255)
                                                                                                    cATCTTAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCg                                                                   >  2:1064313/1‑107 (MQ=255)
                                                                                                        ttAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTg                                                                                <  2:838703/90‑1 (MQ=255)
                                                                                                        ttAACTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTg                                                                                >  1:838703/1‑90 (MQ=255)
                                                                                                           aCTCAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATaa                            >  2:462764/1‑139 (MQ=255)
                                                                                                              cAATGATTCTACGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCa                         <  1:1231950/139‑1 (MQ=255)
                                                                                                                         cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTAcc                                                            >  2:744263/1‑93 (MQ=255)
                                                                                                                         cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTAcc                                                            <  1:744263/93‑1 (MQ=255)
                                                                                                                         cGTGTTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTc              <  1:446501/139‑1 (MQ=255)
                                                                                                                           tgtTGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCaa            >  2:460580/1‑139 (MQ=255)
                                                                                                                             ttGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGc                                                                  >  2:975770/1‑83 (MQ=255)
                                                                                                                             ttGATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGc                                                                  <  1:975770/83‑1 (MQ=255)
                                                                                                                               gATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  >  1:1512419/1‑65 (MQ=255)
                                                                                                                               gATCTGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGActc                                                                                  <  2:1512419/65‑1 (MQ=255)
                                                                                                                                   tGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATAtct                                                                     >  2:1137144/1‑74 (MQ=255)
                                                                                                                                   tGCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATAtct                                                                     <  1:1137144/74‑1 (MQ=255)
                                                                                                                                    gCATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGAc   >  2:1202587/1‑139 (MQ=255)
                                                                                                                                     cATAACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACt  <  2:381562/139‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACGTGTTGATCTGCATGACCCAATTGATACAGAAAATATGGATAACCCATTCTTTCAACCCAGGGTTGACTCTGGTGCTATATCTCGCTTTACCAGTGCGTTAAAAGCAAAGCTTAAACATGATAAGCATATTAAAACTCAACGGAAAGACT  >  NC_000913/2760531‑2760802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A