Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
771 |
44.8 |
2153074 |
94.1% |
2026042 |
109.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,248,410 |
A→G |
A235A (GCT→GCC) |
dhaM ← |
putative dihydroxyacetone‑specific PTS enzymes: HPr, EI components |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,248,410 | 0 | A | G | 100.0%
| 170.2
/ NA
| 48 | A235A (GCT→GCC) | dhaM | putative dihydroxyacetone‑specific PTS enzymes: HPr, EI components |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (23/25); total (23/25) |
CCACGGTCAGGGTTGATTTTGCCTGTACCGTACATAAAACTGGTTGATAATAAAAGGCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCAGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAATCTGGTTAATAC > NC_000913/1248280‑1248516
|
ccACGGTCAGGGTTGATTTTGCCTGTACCGTACATAAAACTGGTTGATAATAAAAGGCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTg < 2:964904/139‑1 (MQ=255)
aCGGTCAGGGTTGATTTTGCCTGTACCGTACATAAAACTAGTTGATAATAAAAGCCTTTGCCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACTAAAGTTATCGTCGGCCAGCTGAc > 2:708591/1‑139 (MQ=255)
tGATTTTGCCTGTACCGTACATAAAACTGGTTGATAATAAAAGGCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATc < 2:913626/139‑1 (MQ=255)
tACCGTACATAAAACTGGTTGATAATAAAAGGCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCa > 2:778529/1‑139 (MQ=255)
gTACATAAAACTGGTTGATAATAAAAGGCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCtt > 1:741877/1‑139 (MQ=255)
aataaAAGGCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAg < 2:637002/139‑1 (MQ=255)
gCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAg < 2:559138/137‑1 (MQ=255)
gCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAg > 1:559138/1‑137 (MQ=255)
gCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCg < 1:859372/139‑1 (MQ=255)
tttACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGAc < 1:88571/83‑1 (MQ=255)
tttACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGAc > 2:88571/1‑83 (MQ=255)
tttACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGAGACTTCCTCAGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTa > 2:661151/1‑139 (MQ=255)
ttACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTAt > 2:557812/1‑139 (MQ=255)
ttACCCGAAACAGGCGGAACGAGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTAt > 2:1038692/1‑139 (MQ=255)
aaCAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAg > 1:292478/1‑139 (MQ=255)
ggCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGaa < 1:610115/139‑1 (MQ=255)
gCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAAc > 1:665505/1‑139 (MQ=255)
cGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGaa < 2:681247/72‑1 (MQ=255)
cGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGaa > 1:681247/1‑72 (MQ=255)
cGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTc > 2:490676/1‑90 (MQ=255)
cGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTc < 1:490676/90‑1 (MQ=255)
aCGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGc > 1:445952/1‑80 (MQ=255)
aCGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGc < 2:445952/80‑1 (MQ=255)
ggACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTgtagta < 1:843201/139‑1 (MQ=255)
gagTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAAt < 1:557812/139‑1 (MQ=255)
gagTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAAt < 1:845970/139‑1 (MQ=255)
gagTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAAt < 1:933721/139‑1 (MQ=255)
gagTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAAt < 2:991592/139‑1 (MQ=255)
gagTAGGTGGAGCGACTTCCTCCGATTCACCAAAGTTATCTCCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAAt < 2:614394/139‑1 (MQ=255)
agTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAg < 2:707551/59‑1 (MQ=255)
agTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAg > 1:707551/1‑59 (MQ=255)
gTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAATCt < 2:665505/139‑1 (MQ=255)
ggTGGAGCGACTTCCTCAGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCACTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAATCTggc < 1:661151/139‑2 (MQ=255)
gTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTg < 2:984188/63‑1 (MQ=255)
gTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTg > 1:984188/1‑63 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTcggccag > 2:215920/1‑38 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTcggccag < 1:215920/38‑1 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACgg > 2:487676/1‑45 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACgg < 1:487676/45‑1 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAg > 2:448331/1‑49 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAg < 1:448331/49‑1 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTg < 2:414160/58‑1 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTg > 1:414160/1‑58 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAATCTGGTTAATAc > 1:950936/1‑139 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAATCTGGTTAATAc > 1:463334/1‑139 (MQ=255)
gCGACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAATCTGGTTAATAc > 1:301693/1‑139 (MQ=255)
gACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCg > 1:751269/1‑80 (MQ=255)
gACTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCg < 2:751269/80‑1 (MQ=255)
cTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAAt < 2:121549/124‑1 (MQ=255)
cTTCCTCCGTTTCACCAAAGTTATCTTCGGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAAt > 1:121549/1‑124 (MQ=255)
|
CCACGGTCAGGGTTGATTTTGCCTGTACCGTACATAAAACTGGTTGATAATAAAAGGCTTTACCCGAAACAGGCGGAACGGGACGCAGAGTAGGTGGAGCGACTTCCTCCGTTTCACCAAAGTTATCTTCAGCCAGCTGACGGAAAGCGATCAGTGCCTCTTCAGCTTCTGGCCCTTTCGCAATCAGGCGCAGCGTATCGTTATAGCGAACTTGTAGTAACGCAATCTGGTTAATAC > NC_000913/1248280‑1248516
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
