Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
771 |
44.8 |
2153074 |
94.1% |
2026042 |
109.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,930,941 |
G→A |
G21S (GGT→AGT) |
purT → |
phosphoribosylglycinamide formyltransferase 2 |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,930,941 | 0 | G | A | 100.0%
| 227.2
/ NA
| 70 | G21S (GGT→AGT) | purT | phosphoribosylglycinamide formyltransferase 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (39/31); total (39/31) |
ATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTGAT > NC_000913/1930811‑1931075
|
aTCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTg > 1:569243/1‑139 (MQ=255)
aTCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTg > 2:255126/1‑139 (MQ=255)
cGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATc > 2:917012/1‑139 (MQ=255)
tttCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAg < 1:917012/139‑1 (MQ=255)
cgcgcgGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGaa > 2:988528/1‑95 (MQ=255)
cgcgcgGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGaa < 1:988528/95‑1 (MQ=255)
cgcgcgGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACt > 1:430519/1‑97 (MQ=255)
cgcgcgGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACt < 2:430519/97‑1 (MQ=255)
cgcgcgGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCa < 1:536862/124‑1 (MQ=255)
cgcgcgGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCa > 2:536862/1‑124 (MQ=255)
gcgcgGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTagag > 2:58869/1‑139 (MQ=255)
aaTCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCg < 1:28872/139‑1 (MQ=255)
gggATATTCGTTATGACGTTATTAGGCACTGCGCTGCTTCCGGCAGCAACTCGCGTGCTGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATc > 2:225003/1‑139 (MQ=255)
atatTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAg < 2:954078/105‑1 (MQ=255)
atatTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAg > 1:954078/1‑105 (MQ=255)
gTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCa < 2:982100/139‑1 (MQ=255)
gTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCa > 1:982100/1‑139 (MQ=255)
tattaGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGc > 2:773421/1‑139 (MQ=255)
tgcgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGaa < 1:738210/49‑1 (MQ=255)
tgcgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGaa > 2:738210/1‑49 (MQ=255)
tgcgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTa < 1:29573/56‑1 (MQ=255)
tgcgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTa > 2:29573/1‑56 (MQ=255)
tgcgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTg > 2:40850/1‑64 (MQ=255)
tgcgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTg < 1:40850/64‑1 (MQ=255)
tgcgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTc > 1:899671/1‑139 (MQ=255)
tgcgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTc > 1:488826/1‑139 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAAt < 1:706097/67‑1 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAAt < 1:759100/67‑1 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAAt > 2:706097/1‑67 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTcgc > 2:814828/1‑139 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTcgc > 1:1072959/1‑139 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTcgc > 2:639791/1‑139 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTcgc > 2:1017455/1‑139 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTcgc > 1:842719/1‑139 (MQ=255)
cgctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTAAACTGGGTAAAGAAGTGGCAAt > 2:759100/1‑67 (MQ=255)
gctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTcgcg < 1:814828/139‑1 (MQ=255)
ctgcgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCgcgc > 2:873056/1‑139 (MQ=255)
cgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCg < 2:116842/74‑1 (MQ=255)
cgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCg > 1:116842/1‑74 (MQ=255)
cgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCg > 1:429067/1‑100 (MQ=255)
cgTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCg < 2:429067/100‑1 (MQ=255)
ggCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCAc < 2:649608/113‑1 (MQ=255)
ggCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCAc > 1:649608/1‑113 (MQ=255)
ggCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTcc > 1:34660/1‑139 (MQ=255)
ggCAGCAACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCACATCGCTcc > 1:471445/1‑139 (MQ=255)
gcagcaACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTccc < 2:242009/139‑1 (MQ=255)
cagcaACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCa < 1:1017455/139‑1 (MQ=255)
agcaACTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCAt < 1:799921/139‑1 (MQ=255)
aaCTCGCGTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTc < 1:873056/139‑1 (MQ=255)
cgcgTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTa > 2:936055/1‑139 (MQ=255)
cgTGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAat < 1:58869/139‑1 (MQ=255)
tGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCAt < 2:417753/119‑1 (MQ=255)
tGATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCAt > 1:417753/1‑119 (MQ=255)
gATGTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCACATCGCTCCCATGTCATTAATATg < 2:471445/139‑1 (MQ=255)
gTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCa > 2:1008054/1‑97 (MQ=255)
gTTATTAGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCa < 1:1008054/97‑1 (MQ=255)
tattaGGCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGa < 2:34660/139‑1 (MQ=255)
ggCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTg < 1:936055/139‑1 (MQ=255)
ggCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTg < 2:488826/139‑1 (MQ=255)
ggCTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTg < 1:639791/139‑1 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGtct > 1:347979/1‑45 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGtct < 2:347979/45‑1 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCg > 1:868269/1‑50 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCg < 2:868269/50‑1 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTGAt > 2:991860/1‑139 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTGAt > 2:916397/1‑139 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTGAt > 2:143952/1‑139 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTGAt > 2:360493/1‑139 (MQ=255)
cTCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTGAt > 2:36186/1‑139 (MQ=255)
tCCAGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCa < 1:667014/113‑1 (MQ=255)
|
ATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTCGCGCATCGCTCCCATGTCATTAATATGCTTGATGGTGAT > NC_000913/1930811‑1931075
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A