Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I2 R1
|
772 |
77.0 |
3769570 |
91.6% |
3452926 |
105.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
681,418 |
C→T |
R403C (CGT→TGT) |
djlC → |
J domain‑containing HscC co‑chaperone, Hsc56 |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 681,418 | 0 | C | T | 100.0%
| 213.5
/ NA
| 65 | R403C (CGT→TGT) | djlC | J domain‑containing HscC co‑chaperone, Hsc56 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (31/34); total (31/34) |
TCAAGCGCAAAGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCCGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGAAGATGTCGATGAGCCAACACCTGAAAATCATG > NC_000913/681284‑681547
|
tcAAGCGCAAAGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCt > 2:1265988/1‑139 (MQ=255)
aaGCGCAAAGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTa > 2:1464028/1‑139 (MQ=255)
aGCGCAAAGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTaa > 1:77283/1‑139 (MQ=255)
cgcAAAGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATa < 2:77283/139‑1 (MQ=255)
gcAAAGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATAc > 1:541942/1‑139 (MQ=255)
aaGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTAT‑GGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCt < 2:429302/129‑1 (MQ=255)
aaGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTAT‑GGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCt > 1:429302/1‑129 (MQ=255)
tggtggAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCg > 2:741355/1‑139 (MQ=255)
tggtggAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCg > 2:1825315/1‑139 (MQ=255)
tggtggAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCg > 2:368233/1‑139 (MQ=255)
gtggAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGga > 1:1509573/1‑139 (MQ=255)
gtggAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGga > 1:1250825/1‑139 (MQ=255)
gAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGAt < 1:1825315/139‑1 (MQ=255)
aaTCGAGAGTCTGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGc < 1:912069/139‑1 (MQ=255)
aaTCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTg > 2:509641/1‑125 (MQ=255)
aaTCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTg < 1:509641/125‑1 (MQ=255)
aaTCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGc < 1:1464028/139‑1 (MQ=255)
aaTCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGc < 2:1509573/139‑1 (MQ=255)
aaTCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGc < 2:1250825/139‑1 (MQ=255)
aaTCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGc < 2:541942/139‑1 (MQ=255)
aTCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCt < 1:368233/139‑1 (MQ=255)
gagaGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCAt < 2:466106/139‑1 (MQ=255)
gagaGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCAt < 2:185622/139‑1 (MQ=255)
gagTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGc < 2:1241873/133‑1 (MQ=255)
gagTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGAAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCCGAGATGc > 1:1241873/1‑133 (MQ=255)
ggTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTag > 1:425014/1‑139 (MQ=255)
aGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAgg < 1:1265988/139‑1 (MQ=255)
aGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAgg < 1:741355/139‑1 (MQ=255)
agaCAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCAt < 2:425014/139‑1 (MQ=255)
gATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGa > 1:285270/1‑139 (MQ=255)
aCCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCt < 1:910367/78‑1 (MQ=255)
aCCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCt > 2:910367/1‑78 (MQ=255)
aCCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTc < 2:355277/107‑1 (MQ=255)
aCCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTc > 1:355277/1‑107 (MQ=255)
aCCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCtt > 1:504961/1‑139 (MQ=255)
ccTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCa < 1:423679/102‑1 (MQ=255)
ccTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCa > 2:423679/1‑102 (MQ=255)
ccTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACg < 2:651880/139‑1 (MQ=255)
gTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCAt < 1:1066296/94‑1 (MQ=255)
gTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCAt > 2:1066296/1‑94 (MQ=255)
aGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCg < 1:69487/139‑1 (MQ=255)
cGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCgga > 1:529597/1‑139 (MQ=255)
cAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATg < 1:99918/139‑1 (MQ=255)
gtaCTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCg < 2:554021/126‑1 (MQ=255)
gtaCTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCg > 1:554021/1‑126 (MQ=255)
aCTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGc < 2:218550/81‑1 (MQ=255)
aCTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGc > 1:218550/1‑81 (MQ=255)
aCTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCg > 2:51756/1‑124 (MQ=255)
aCTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCg < 1:51756/124‑1 (MQ=255)
aCTTGAAGCGTTTCAGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTAACCCGGATGATTTTGAGGAAAGTGAAACTAGAGCAGGAGGATGAAGAGGTc > 1:120133/1‑139 (MQ=255)
aaGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTgg > 1:943167/1‑48 (MQ=255)
aaGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTgg < 2:943167/48‑1 (MQ=255)
aaGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGc > 2:1698453/1‑76 (MQ=255)
aaGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGc < 1:1698453/76‑1 (MQ=255)
aaGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGcc < 2:585260/118‑1 (MQ=255)
aaGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGcc > 1:585260/1‑118 (MQ=255)
aaGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGAAGATGTCGATGa > 2:58211/1‑139 (MQ=255)
aGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTAATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCggagg > 1:861834/1‑122 (MQ=255)
aGCGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTAATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCggagg < 2:861834/122‑1 (MQ=255)
cGTTTCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGGTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGAAGATGTCGATGAGcc < 2:285270/139‑1 (MQ=255)
atttCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGAAGATGTCGATGAGCCa > 1:1173424/2‑139 (MQ=255)
tttCCGAAACAAGAGATGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGTAGATGTCGATGAGCCaa < 2:1173424/139‑1 (MQ=255)
aTGCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGAAGATATCGATGAGCCAACACCTGAAAATCATg < 1:1120671/139‑1 (MQ=255)
gCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGAAg < 2:128509/107‑1 (MQ=255)
gCTGGCCTGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGAAg > 1:128509/1‑107 (MQ=255)
|
TCAAGCGCAAAGCATGGGCGTGGTGGAAATCGAGAGTCGGTAGCGAGACAGAGCAAGATTCACCGTTCCTGGATTTGTATCGGGTAGCGGAACAGGTAGTACTTGAAGCGTTTCCGAAACAAGAGATGCTGGCCCGTCTTAATACAAGGCTGGAAGGCGGAGATGCTCATCCATTAGAGGCCATTGTCACCCGGATGCTTTTGACGAAAGTGAAACTCGAGCCGGAGGATGAAGATGTCGATGAGCCAACACCTGAAAATCATG > NC_000913/681284‑681547
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A