Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I2 R1	772	77.0	3769570	91.6%	3452926	105.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,627,124	T→C	D86G (GAT→GGT)	dcp ←	dipeptidyl carboxypeptidase II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,627,124	0	T	C	100.0%	278.9 / NA	77	D86G (GAT→GGT)	dcp	dipeptidyl carboxypeptidase II
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (39/38); total (39/38)

TTCACTATCAAGCCCCAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCATCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTTGAAATCAGGCATTTGCGGGTTAAGCGCGATGGCAGCAATTTCT  >  NC_000913/1626988‑1627258

ttCACTATCAAGCCCCAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATtcacca                                                                                                                                      >  2:240986/1‑139 (MQ=255)

  cACTATCAAGCCCCAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCAtt                                                                                                                                    >  1:1137060/1‑139 (MQ=255)

        cAAGCCCCAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATg                                                                                                                              <  1:1542782/139‑1 (MQ=255)

        cAAGCCCCAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATg                                                                                                                              <  2:402101/139‑1 (MQ=255)

          aGCCCCAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATgcg                                                                                                                            <  2:829598/139‑1 (MQ=255)

          aGCCCCAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATgcg                                                                                                                            >  2:1578313/1‑139 (MQ=255)

             cccAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGcgccg                                                                                                                         <  2:392158/139‑1 (MQ=255)

                 gggATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt                                                                                                                     >  1:487667/1‑139 (MQ=255)

                    aTTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCAt                                                                                                                  <  2:1137060/139‑1 (MQ=255)

                       cACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGc                                                                                                               >  1:476058/1‑139 (MQ=255)

                       cACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGc                                                                                                               >  2:1839912/1‑139 (MQ=255)

                           gcgcTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCaaaa                                                                                                           >  1:1279711/1‑139 (MQ=255)

                               tGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGa                                                                                                       <  2:487667/139‑1 (MQ=255)

                                        gCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTaa                                                                                              <  1:1686715/139‑1 (MQ=255)

                                          aTCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcg                                                                                            <  1:464349/139‑1 (MQ=255)

                                           tCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcgc                                                                                           <  2:1279711/139‑1 (MQ=255)

                                           tCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcgc                                                                                           >  1:645055/1‑139 (MQ=255)

                                           tCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTAGTAAcgc                                                                                           <  1:549361/139‑1 (MQ=255)

                                             tACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCgg                                                                                         <  2:645055/139‑1 (MQ=255)

                                                   cgcgAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcgc                                                                                           <  2:696750/131‑1 (MQ=255)

                                                   cgcgAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcgc                                                                                           >  1:696750/1‑131 (MQ=255)

                                                          aatTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATtctc                                                                            <  1:1839912/139‑1 (MQ=255)

                                                                  gTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGcgccg                                                                                                                         >  2:89990/1‑86 (MQ=255)

                                                                  gTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGcgccg                                                                                                                         <  1:89990/86‑1 (MQ=255)

                                                                  gTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcg                                                                                            >  2:1148142/1‑115 (MQ=255)

                                                                  gTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcg                                                                                            <  1:1148142/115‑1 (MQ=255)

                                                                     cAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTcc                                                                 <  2:476058/139‑1 (MQ=255)

                                                                          agataTCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGc                                                            <  2:929973/139‑1 (MQ=255)

                                                                          agataTCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGc                                                            <  1:429945/139‑1 (MQ=255)

                                                                             tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt                                                                                                                     >  1:922964/1‑79 (MQ=255)

                                                                             tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt                                                                                                                     <  2:922964/79‑1 (MQ=255)

                                                                             tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt                                                                                                                     <  2:227179/79‑1 (MQ=255)

                                                                             tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt                                                                                                                     >  1:227179/1‑79 (MQ=255)

                                                                             tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcg                                                                                            <  2:1033773/104‑1 (MQ=255)

                                                                             tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcg                                                                                            >  1:1033773/1‑104 (MQ=255)

                                                                             tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAg                                                         >  2:1438506/1‑139 (MQ=255)

                                                                             tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAg                                                         >  1:1224916/1‑139 (MQ=255)

                                                                              atCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAg                                                               >  1:1004360/1‑132 (MQ=255)

                                                                              atCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAg                                                               <  2:1004360/132‑1 (MQ=255)

                                                                                 aTTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATa                                                     >  1:118533/1‑139 (MQ=255)

                                                                                  ttAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGa                                                                                                       <  2:1881064/88‑1 (MQ=255)

                                                                                  ttAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGa                                                                                                       >  1:1881064/1‑88 (MQ=255)

                                                                                  ttAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTcc                                                                 >  2:33464/1‑126 (MQ=255)

                                                                                  ttAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTcc                                                                 <  2:116232/126‑1 (MQ=255)

                                                                                  ttAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTcc                                                                 <  1:33464/126‑1 (MQ=255)

                                                                                  ttAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTcc                                                                 >  1:116232/1‑126 (MQ=255)

                                                                                  ttAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAg                                                    >  1:902173/1‑139 (MQ=255)

                                                                                    aGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTa                                                  <  1:240986/139‑1 (MQ=255)

                                                                                      ccAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGt                                                                                                                                 >  1:1315232/1‑58 (MQ=255)

                                                                                      ccAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGt                                                                                                                                 <  2:1315232/58‑1 (MQ=255)

                                                                                      ccAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCgg                                                                                         <  1:1511919/98‑1 (MQ=255)

                                                                                      ccAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCgg                                                                                         >  2:1511919/1‑98 (MQ=255)

                                                                                      ccAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAg                                                         <  2:1121295/130‑1 (MQ=255)

                                                                                      ccAGTTCCGCCAGTTCAGCGGAAAACTACTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAg                                                         >  1:1121295/1‑130 (MQ=255)

                                                                                          ttCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCAt                                                                                                                  <  2:1531834/69‑1 (MQ=255)

                                                                                          ttCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCAt                                                                                                                  >  1:1531834/1‑69 (MQ=255)

                                                                                          ttCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcg                                                                                            <  1:1260997/91‑1 (MQ=255)

                                                                                          ttCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcg                                                                                            >  2:1260997/1‑91 (MQ=255)

                                                                                          ttCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTAttgttg                                            >  1:1604698/1‑139 (MQ=255)

                                                                                          ttCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTAttgttg                                            >  1:378122/1‑139 (MQ=255)

                                                                                               ccAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATc                                                                                                                 >  2:193429/1‑65 (MQ=255)

                                                                                               ccAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATc                                                                                                                 <  1:193429/65‑1 (MQ=255)

                                                                                               ccAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGtt                                                                   <  2:397476/111‑1 (MQ=255)

                                                                                               ccAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGtt                                                                   >  1:397476/1‑111 (MQ=255)

                                                                                                   ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGc                                                            >  1:978448/1‑114 (MQ=255)

                                                                                                   ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGc                                                            <  2:978448/114‑1 (MQ=255)

                                                                                                   ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTAttgt                                              <  1:934473/128‑1 (MQ=255)

                                                                                                   ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTAttgt                                              >  2:934473/1‑128 (MQ=255)

                                                                                                   ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTAt                                                 >  2:350862/1‑125 (MQ=255)

                                                                                                   ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTAt                                                 <  1:350862/125‑1 (MQ=255)

                                                                                                        cGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTTGAAATCAGGCATTTg                              >  2:1437762/1‑139 (MQ=255)

                                                                                                                       cAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTTGAAATCAGGCATTTGCGGGTTAAGCGCGAt               <  1:1335847/139‑1 (MQ=255)

                                                                                                                               tGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTTGAAATCAGGCATTTGCGGGTTAAGCGCGATGGCAGCaa       >  1:125356/1‑139 (MQ=255)

                                                                                                                                 tAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCgg                                                                                         >  1:1283353/1‑55 (MQ=255)

                                                                                                                                 tAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCgg                                                                                         <  2:1283353/55‑1 (MQ=255)

                                                                                                                                 tAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTTGAAATCAGGCATTTGCGGGTTAAGCGCGATGGCAGCAAtt     >  1:497485/1‑139 (MQ=255)

                                                                                                                                    ttCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTTGAAATCAGGCATTTGCGGGTTAAGCGCGATGGCAGCAATTTCt  >  1:96742/1‑139 (MQ=255)

                                                                                                                                    ttCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTTGAAATCAGGCATTTGCGGGTTAAGCGCGATGGCAGCAATTTCt  >  1:1074630/1‑139 (MQ=255)

TTCACTATCAAGCCCCAGGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCATCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTTGAAATCAGGCATTTGCGGGTTAAGCGCGATGGCAGCAATTTCT  >  NC_000913/1626988‑1627258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A