Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
748 |
32.0 |
1685426 |
92.6% |
1560704 |
103.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,627,124 |
T→C |
D86G (GAT→GGT) |
dcp ← |
dipeptidyl carboxypeptidase II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,627,124 | 0 | T | C | 100.0%
| 102.2
/ NA
| 29 | D86G (GAT→GGT) | dcp | dipeptidyl carboxypeptidase II |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (15/14); total (15/14) |
GGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCATCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTT > NC_000913/1627005‑1627215
|
gggATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTGTGCGCCGCAGt < 1:353920/139‑1 (MQ=255)
gggATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt < 1:238525/139‑1 (MQ=255)
gggATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt > 2:639714/1‑139 (MQ=255)
gggATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt > 2:29144/1‑139 (MQ=255)
gATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCa > 1:651131/1‑139 (MQ=255)
cATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAc < 1:639714/139‑1 (MQ=255)
aTCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcg < 1:29144/139‑1 (MQ=255)
tCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcgc < 2:638020/139‑1 (MQ=255)
tCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAcgc > 1:638020/1‑139 (MQ=255)
gTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGt > 2:160504/1‑139 (MQ=255)
cAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTcc < 2:651131/139‑1 (MQ=255)
atagataTCATTAGCCAGTGCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGt < 2:115566/139‑1 (MQ=255)
agataTCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGc < 1:160504/139‑1 (MQ=255)
gataTCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGcc > 2:720424/1‑139 (MQ=255)
tatCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAg > 1:675571/1‑139 (MQ=255)
atCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGCATGCGCCGCAGTCATCGCAAAAAAGACGCTGATAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGa > 1:72382/1‑139 (MQ=255)
aGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTa > 1:38098/1‑139 (MQ=255)
ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAc > 2:424596/1‑81 (MQ=255)
ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAAc < 1:424596/81‑1 (MQ=255)
ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGgt > 1:88261/1‑87 (MQ=255)
ttCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGgt < 2:88261/87‑1 (MQ=255)
gCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt > 2:385330/1‑53 (MQ=255)
gCGGAAAACTGCTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGt < 1:385330/53‑1 (MQ=255)
gtCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGaa > 1:515999/2‑104 (MQ=255)
cTCGTCAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGaa < 2:515999/104‑1 (MQ=255)
cAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTAttgtt < 1:527044/109‑1 (MQ=255)
cAAGACGCTGTAATTCACCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTAttgtt > 2:527044/1‑109 (MQ=255)
tGTAATTCACCATTGGTATGCGCCGCAGTCATCGCaaaa > 2:265724/1‑39 (MQ=255)
tGTAATTCACCATTGGTATGCGCCGCAGTCATCGCaaaa < 1:265724/39‑1 (MQ=255)
|
GGGATTCACGGCGCTGCCAGACAGCATCTACCCGCGCGAATAATTCACCGTTCAGATAGATATCATTAGCCAGTTCCGCCAGTTCAGCGGAAAACTGCTCGTCAAGACGCTGTAATTCATCATTGGTATGCGCCGCAGTCATCGCAAAAAAGACGCTGGTAACGCGGGTAAGTAATTCTCCGCTTTGTTCCAGTGCCAGAATAGTATTGTT > NC_000913/1627005‑1627215
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
