Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I2 R1	772	77.0	3769570	91.6%	3452926	105.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,634,532	T→C	D260G (GAT→GGT)	rob ←	right oriC‑binding transcriptional activator, AraC family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,634,532	0	T	C	100.0%	313.6 / NA	87	D260G (GAT→GGT)	rob	right oriC‑binding transcriptional activator, AraC family
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (45/42); total (45/42)

GCATCTGGACGCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCAT  >  NC_000913/4634405‑4634659

gCATCTGGACGCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTa                                                                                                                      >  1:174878/1‑139 (MQ=255)

gCATCTGGACGCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTa                                                                                                                      >  1:885226/1‑139 (MQ=255)

  aTCTGGACGCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACg                                                                                                                    <  1:98893/139‑1 (MQ=255)

            cccTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          >  1:1239486/1‑139 (MQ=255)

            cccTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          <  1:1657616/139‑1 (MQ=255)

                   ttAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCa                                                                                                   <  1:997124/139‑1 (MQ=255)

                      gATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTg                                                                                                >  2:1493435/1‑139 (MQ=255)

                      gATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTg                                                                                                >  2:1571649/1‑139 (MQ=255)

                           gCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATg                                                                                           >  1:924611/1‑139 (MQ=255)

                           gCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATg                                                                                           >  1:1270151/1‑139 (MQ=255)

                            cTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGc                                                                                          <  2:826130/139‑1 (MQ=255)

                               cAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACg                                                                                       <  2:1239486/139‑1 (MQ=255)

                               cAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACg                                                                                       <  2:705366/139‑1 (MQ=255)

                                   gTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTcc                                                                                   <  2:924611/139‑1 (MQ=255)

                                            ggATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          <  1:1498275/107‑1 (MQ=255)

                                            ggATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          >  2:1498275/1‑107 (MQ=255)

                                              aTCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCGGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCa                                                                        >  1:1230833/1‑139 (MQ=255)

                                              aTCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          >  1:1608492/1‑105 (MQ=255)

                                              aTCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          <  2:1608492/105‑1 (MQ=255)

                                              aTCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCa                                                                        >  1:103747/1‑139 (MQ=255)

                                                cGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAgg                                                                      <  2:1270151/139‑1 (MQ=255)

                                                        gcagTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTc                                                              >  2:288850/1‑139 (MQ=255)

                                                         cagTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTcc                                                             >  1:1881571/1‑139 (MQ=255)

                                                            ttCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGtat                                                                               <  2:113633/118‑1 (MQ=255)

                                                            ttCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGtat                                                                               >  1:113633/1‑118 (MQ=255)

                                                            ttCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGc                                                          >  1:661273/1‑139 (MQ=255)

                                                            ttCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGc                                                          >  1:1523143/1‑139 (MQ=255)

                                                             tCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCa                                                         <  2:1523143/139‑1 (MQ=255)

                                                               acaGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAGCTCCTGCACg                                                       <  2:174878/139‑1 (MQ=255)

                                                                caGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGc                                                      <  2:1881571/139‑1 (MQ=255)

                                                                  gCGTAGATTAATTGGGCTATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCg                                                    <  2:150378/139‑1 (MQ=255)

                                                                      aGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTc                                                >  2:812830/1‑139 (MQ=255)

                                                                      aGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTc                                                >  2:208811/1‑139 (MQ=255)

                                                                        aTTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTccc                                              >  2:1336957/1‑139 (MQ=255)

                                                                          tAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAg                                            <  2:597971/139‑1 (MQ=255)

                                                                          tAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAg                                            <  1:1277770/139‑1 (MQ=255)

                                                                            aTTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGAc                                          <  1:1336957/139‑1 (MQ=255)

                                                                             ttGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGc                                                                                          >  1:544456/1‑90 (MQ=255)

                                                                             ttGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGc                                                                                          <  2:544456/90‑1 (MQ=255)

                                                                             ttGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGAcc                                         >  1:1415383/1‑139 (MQ=255)

                                                                                ggCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATg                                                                                           >  1:976772/1‑86 (MQ=255)

                                                                                ggCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATg                                                                                           <  2:976772/86‑1 (MQ=255)

                                                                                ggCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTc                                      <  2:1415383/139‑1 (MQ=255)

                                                                                  cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          <  1:500548/69‑1 (MQ=255)

                                                                                  cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          >  2:500548/1‑69 (MQ=255)

                                                                                  cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATg                                                                                           >  1:713704/1‑84 (MQ=255)

                                                                                  cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATg                                                                                           <  2:713704/84‑1 (MQ=255)

                                                                                  cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCAt                                    >  2:1101855/1‑139 (MQ=255)

                                                                                  cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCAt                                    >  2:554570/1‑139 (MQ=255)

                                                                                   gATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACg                                                                                                                    >  1:198034/1‑58 (MQ=255)

                                                                                   gATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACg                                                                                                                    <  2:198034/58‑1 (MQ=255)

                                                                                    aTCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAg                                  <  1:1493435/139‑1 (MQ=255)

                                                                                    aTCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAg                                  >  2:1040078/1‑139 (MQ=255)

                                                                                        cccGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGt                                                                                                              <  1:230413/59‑1 (MQ=255)

                                                                                        cccGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGt                                                                                                              >  2:230413/1‑59 (MQ=255)

                                                                                         ccGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTaaa                             <  1:554570/139‑1 (MQ=255)

                                                                                            cTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGt                                                                                                              <  1:765575/55‑1 (MQ=255)

                                                                                            cTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGt                                                                                                              >  2:765575/1‑55 (MQ=255)

                                                                                            cTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCtt                                       >  2:138429/1‑126 (MQ=255)

                                                                                            cTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCtt                                       <  1:138429/126‑1 (MQ=255)

                                                                                            cTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACAt                          >  2:152311/1‑139 (MQ=255)

                                                                                               tgtcATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTg                                                           >  1:1089717/4‑103 (MQ=255)

                                                                                               tGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          >  2:1768939/1‑56 (MQ=255)

                                                                                               tGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAgg                                                                                                          <  1:1768939/56‑1 (MQ=255)

                                                                                               tGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTg                                                           <  2:1089717/103‑1 (MQ=255)

                                                                                               tGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTcc                                               >  2:451185/1‑115 (MQ=255)

                                                                                               tGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTcc                                               <  1:451185/115‑1 (MQ=255)

                                                                                               tGGCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATcac                       >  2:1481131/1‑139 (MQ=255)

                                                                                                ggCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATcaca                      >  2:362776/1‑139 (MQ=255)

                                                                                                 gCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGta                                                                                <  1:188462/80‑1 (MQ=255)

                                                                                                 gCATCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGta                                                                                >  2:188462/1‑80 (MQ=255)

                                                                                                   aTCTTCTGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACatat                   >  2:1538917/1‑139 (MQ=255)

                                                                                                         tGCCGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTcgccg             <  1:288850/139‑1 (MQ=255)

                                                                                                           ccGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCa                                                         >  2:987039/1‑93 (MQ=255)

                                                                                                           ccGGGTAGTATCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCa                                                         <  1:987039/93‑1 (MQ=255)

                                                                                                                tagtaTCGCTCAATACCCTGACCTTTACGGCGCGt                                                                                                              >  1:770860/1‑35 (MQ=255)

                                                                                                                tagtaTCGCTCAATACCCTGACCTTTACGGCGCGt                                                                                                              <  2:770860/35‑1 (MQ=255)

                                                                                                                tagtaTCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTgca      <  2:103747/139‑1 (MQ=255)

                                                                                                                tagtaTCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTgca      >  2:305299/1‑139 (MQ=255)

                                                                                                                 agtaTCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTgcag     <  1:1571649/139‑1 (MQ=255)

                                                                                                                    aTCGCTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCAt  <  1:305299/139‑1 (MQ=255)

                                                                                                                        cTCAATGCCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTa                               <  1:1846554/106‑1 (MQ=255)

                                                                                                                        cTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGc                                                                                          <  1:1848911/47‑1 (MQ=255)

                                                                                                                        cTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGc                                                                                          >  2:1848911/1‑47 (MQ=255)

                                                                                                                        cTCAATACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTa                               >  2:1846554/1‑106 (MQ=255)

                                                                                                                           aaTACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGa                                           <  1:904796/91‑1 (MQ=255)

                                                                                                                           aaTACCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGa                                           >  2:904796/1‑91 (MQ=255)

GCATCTGGACGCCCCTGCATTAGATGAGCTGCAGCGTTAACGACGGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCAT  >  NC_000913/4634405‑4634659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A