Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F1 I1 R1 770 68.5 3470224 91.7% 3182195 103.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,634,581 A→G Y244H (TAC→CAC)  rob ← right oriC‑binding transcriptional activator, AraC family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,634,5810AG100.0% 266.0 / NA 74Y244H (TAC→CAC) robright oriC‑binding transcriptional activator, AraC family
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (34/40);  total (34/40)

GGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTG  >  NC_000913/4634449‑4634714
                                                                                                                                    |                                                                                                                                     
ggATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGGGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGt                                                                                                                                 >  2:1091609/1‑139 (MQ=255)
 gATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTc                                                                                                                                <  2:1244154/139‑1 (MQ=255)
                ttCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGc                                                                                                                 >  2:289582/1‑139 (MQ=255)
                    caGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGc                                                                                                             <  2:1601522/139‑1 (MQ=255)
                          aGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTc                                                                                                       >  1:1076483/1‑139 (MQ=255)
                          aGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTc                                                                                                       >  2:426437/1‑139 (MQ=255)
                          aGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTc                                                                                                       >  2:740863/1‑139 (MQ=255)
                            aTTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTccc                                                                                                     >  1:1548900/1‑139 (MQ=255)
                               aaTTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGa                                                                                                  <  2:419921/139‑1 (MQ=255)
                                    ggCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTc                                                                                             >  2:289634/1‑139 (MQ=255)
                                     gCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCa                                                                                            <  1:289582/139‑1 (MQ=255)
                                      cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGTACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCtt                                                                                              >  1:718243/1‑136 (MQ=255)
                                      cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGTACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCtt                                                                                              <  2:718243/136‑1 (MQ=255)
                                      cGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCAt                                                                                           >  1:1415255/1‑139 (MQ=255)
                                        aTCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAg                                                                                         <  2:705541/139‑1 (MQ=255)
                                          ctcCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCa                                                                                                                >  2:202949/1‑114 (MQ=255)
                                          ctcCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCa                                                                                                                <  1:202949/114‑1 (MQ=255)
                                          ctcCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGt                                                                                       <  1:289634/139‑1 (MQ=255)
                                           tcCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTa                                                                                      <  1:1434458/139‑1 (MQ=255)
                                              cGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTa                                                                                      >  1:1574901/1‑136 (MQ=255)
                                              cGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTa                                                                                      <  2:1574901/136‑1 (MQ=255)
                                                cTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACAt                                                                                 <  2:1421577/139‑1 (MQ=255)
                                                cTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACAt                                                                                 <  1:740863/139‑1 (MQ=255)
                                                   tGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTcc                                                                                                      <  1:1568447/115‑1 (MQ=255)
                                                   tGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTcc                                                                                                      >  2:1568447/1‑115 (MQ=255)
                                                   tGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATcac                                                                              >  2:48122/1‑139 (MQ=255)
                                                   tGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATcac                                                                              <  2:1415255/139‑1 (MQ=255)
                                                   tGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACG‑‑GCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAgg                                                                                                                             >  2:706783/1‑90 (MQ=255)
                                                   tGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACG‑‑GCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAgg                                                                                                                             <  1:706783/90‑1 (MQ=255)
                                                    ggCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACg                                                                                                              <  2:1131500/106‑1 (MQ=255)
                                                    ggCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACg                                                                                                              >  1:1131500/1‑106 (MQ=255)
                                                     gCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACat                                                                            >  1:1615895/1‑139 (MQ=255)
                                                                   gtagtaTCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATAtt                                                                         <  2:957472/128‑1 (MQ=255)
                                                                   gtagtaTCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATAtt                                                                         >  1:957472/1‑128 (MQ=255)
                                                                   gtagtaTCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTgc                                                              <  2:1615895/139‑1 (MQ=255)
                                                                     agtaTCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGt                                                                                                                                 <  2:402864/70‑1 (MQ=255)
                                                                     agtaTCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGt                                                                                                                                 >  1:402864/1‑70 (MQ=255)
                                                                            cTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCAcc                                                     >  2:407412/1‑139 (MQ=255)
                                                                                atatCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGtgta                                                                                                                                     >  1:1728688/1‑55 (MQ=255)
                                                                                 tatCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCa                                                                                            <  1:403274/95‑1 (MQ=255)
                                                                                 tatCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCa                                                                                            >  2:403274/1‑95 (MQ=255)
                                                                                  atCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGc                                               <  1:1091609/139‑1 (MQ=255)
                                                                                      tGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAAC‑CCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGt                                          <  2:442373/139‑1 (MQ=255)
                                                                                       gACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGcc                                                                                                            >  1:885117/1‑73 (MQ=255)
                                                                                       gACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGcc                                                                                                            <  2:885117/73‑1 (MQ=255)
                                                                                        aCCTTTACGGCGAGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACTGTCAGGATAAACTCCTGCGCGGCGGTTCCCAGACCTGCATAGGTAAACATCACAGATGCGCCGCCCTGCAGCATCACCGGATGCCCCGTc                                         <  2:929317/139‑1 (MQ=255)
                                                                                         ccTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAg                                                                                         <  2:391132/90‑1 (MQ=255)
                                                                                         ccTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAg                                                                                         >  1:391132/1‑90 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCa                                                                                                                               <  2:1411791/48‑1 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCa                                                                                                                               >  1:1411791/1‑48 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACg                                                                                                              <  2:1212374/65‑1 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACg                                                                                                              >  1:1212374/1‑65 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGa                                                                                                  <  1:87755/77‑1 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGa                                                                                                  >  2:87755/1‑77 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCtt                                                                                              >  2:1416364/1‑81 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCtt                                                                                              <  1:1416364/81‑1 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCGTAGGTAAACATc                                                                                >  2:1417617/1‑95 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCGTAGGTAAACATc                                                                                <  1:1417617/95‑1 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTAc                                    >  1:1283805/1‑139 (MQ=255)
                                                                                             tACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTAc                                    >  1:122663/1‑139 (MQ=255)
                                                                                                          gTTGAGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGcc                       <  1:407412/139‑1 (MQ=255)
                                                                                                              aGCATTGGCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGAt                   >  1:1003259/1‑139 (MQ=255)
                                                                                                                    ggCATGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTcg                                                                       <  2:1074132/81‑1 (MQ=255)
                                                                                                                    ggCATGCACGTTCCGTGTACCGTCAGGAGAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTcg                                                                       >  1:1074132/1‑81 (MQ=255)
                                                                                                                       aTGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGc                                               >  2:781499/1‑102 (MQ=255)
                                                                                                                       aTGCACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGc                                               <  1:781499/102‑1 (MQ=255)
                                                                                                                          cACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAAcg       <  2:1548900/139‑1 (MQ=255)
                                                                                                                          cACGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAAcg       <  1:426437/139‑1 (MQ=255)
                                                                                                                           aCGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCCTCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAAcgc      <  2:1003259/139‑1 (MQ=255)
                                                                                                                            cGTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAAcgcg     <  1:478181/139‑1 (MQ=255)
                                                                                                                             gTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCgg    <  2:202676/139‑1 (MQ=255)
                                                                                                                             gTTCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCgg    <  2:1076483/139‑1 (MQ=255)
                                                                                                                               tCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGAc                                                                                                 >  1:970054/1‑44 (MQ=255)
                                                                                                                               tCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGAc                                                                                                 <  2:970054/44‑1 (MQ=255)
                                                                                                                               tCCGTGTACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCggtg  >  1:38429/1‑139 (MQ=255)
                                                                                                                                    |                                                                                                                                     
GGATCGGAATCAGCAGTTCACAGCGTAGATTAATTGGGCGATCTCCCGCTTTGGCATCTTCTGCCGGGTAGTATCGCTCAATATCCTGACCTTTACGGCGCGTCAGGTTGAGCATTGGCATGCACGTTCCGTATACCGTCAGGATAAACTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTG  >  NC_000913/4634449‑4634714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A