Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
776 |
60.0 |
3074904 |
90.1% |
2770488 |
104.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
545,679 |
(TCA)4→3 |
coding (683‑685/1050 nt) |
allD ← |
ureidoglycolate dehydrogenase |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
545669 |
545671 |
3 |
67 [0] |
[0] 67 |
allD |
ureidoglycolate dehydrogenase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
545672 = | 0 (0.000) | 58 (1.080) |
41/186 |
0.2 |
100% |
coding (692/1050 nt) |
allD |
ureidoglycolate dehydrogenase |
| ? | NC_000913 |
= 545668 |
0 (0.000) | coding (696/1050 nt) |
allD |
ureidoglycolate dehydrogenase |
GATK/CNVnator alignment
N/A
