Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F1 I2 R1
|
758 |
59.3 |
2864096 |
93.9% |
2689386 |
105.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,046,399 |
C→T |
P488S (CCG→TCG) |
yeeJ → |
putative adhesin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,046,399 | 0 | C | T | 100.0%
| 124.1
/ NA
| 39 | P488S (CCG→TCG) | yeeJ | putative adhesin |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (20/19); total (20/19) |
CGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGCCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAG > NC_000913/2046289‑2046533
|
cgtcgCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGa > 2:486654/1‑139 (MQ=255)
aaTATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTg < 2:1243118/139‑1 (MQ=255)
tatGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGc < 1:486654/139‑1 (MQ=255)
tatGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGc < 1:633089/139‑1 (MQ=255)
atGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTAc > 1:1140867/1‑101 (MQ=255)
atGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTAc < 2:1140867/101‑1 (MQ=255)
gAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGc > 1:1046775/1‑131 (MQ=255)
gAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGc < 2:1046775/131‑1 (MQ=255)
aaaGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTgg < 2:762792/129‑1 (MQ=255)
aaaGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTgg > 1:762792/1‑129 (MQ=255)
taACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCAccgcc > 2:715932/1‑139 (MQ=255)
aCGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGaa > 2:925151/1‑104 (MQ=255)
aCGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGaa < 1:925151/104‑1 (MQ=255)
gTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAg < 1:1148549/139‑1 (MQ=255)
gAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGt > 1:1094771/1‑125 (MQ=255)
gAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGt < 2:1094771/125‑1 (MQ=255)
ccGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGtt < 1:810330/76‑1 (MQ=255)
ccGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGtt > 2:810330/1‑76 (MQ=255)
cGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGc > 2:1319818/1‑139 (MQ=255)
gAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGt > 2:464255/1‑139 (MQ=255)
gCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATc < 1:715932/139‑1 (MQ=255)
gTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGa > 1:533418/1‑139 (MQ=255)
aGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGc < 1:464255/139‑1 (MQ=255)
gTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCa < 2:533418/139‑1 (MQ=255)
cacaACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCAt > 1:291431/1‑135 (MQ=255)
cacaACGGGTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCAt < 2:291431/135‑1 (MQ=255)
gTAAAGATATTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCa > 2:492242/1‑139 (MQ=255)
tatTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGa > 2:400651/1‑51 (MQ=255)
tatTCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGa < 1:400651/51‑1 (MQ=255)
ttCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGaa < 1:955505/44‑1 (MQ=255)
ttCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTAc > 2:836900/1‑139 (MQ=255)
ttCTGGTTACCCTGTAGGCTTACCGGTTCACCAGTACGCCAGaa > 2:955505/1‑44 (MQ=255)
tCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAg > 2:261179/1‑80 (MQ=255)
tCTGGTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAg < 1:261179/80‑1 (MQ=255)
gTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATggtggt > 2:695143/1‑119 (MQ=255)
gTTACCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATggtggt < 1:695143/119‑1 (MQ=255)
aCCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCa < 2:134571/126‑1 (MQ=255)
aCCCTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCa > 1:134571/1‑126 (MQ=255)
ccTGTCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCGAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAg > 2:1027363/1‑139 (MQ=255)
|
CGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGGTAAAGATATTCTGGTTACCCTGCCGGCTTACCGGTTCACCAGTACGCCAGAAACCGATAACACCTGGCCGATTGAAGTCACCGCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAG > NC_000913/2046289‑2046533
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
