Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F1 I2 R1
|
758 |
59.3 |
2864096 |
93.9% |
2689386 |
105.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,475,251 |
T→C |
Y90H (TAT→CAT) |
yfdR → |
CPS‑53 (KpLE1) prophage, conserved protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,475,251 | 0 | T | C | 100.0%
| 257.8
/ NA
| 72 | Y90H (TAT→CAT) | yfdR | CPS‑53 (KpLE1) prophage, conserved protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/37); total (35/37) |
TCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACTATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTGATCTCG > NC_000913/2475123‑2475374
|
tCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGAt > 1:80416/1‑139 (MQ=255)
tCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGAt > 1:1398641/1‑139 (MQ=255)
tCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGAt > 1:293305/1‑139 (MQ=255)
tCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGAt > 2:83440/1‑139 (MQ=255)
gCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATgg > 2:154954/1‑139 (MQ=255)
cccAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGga > 2:1383517/1‑139 (MQ=255)
aaCATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGgaaga < 1:441992/139‑1 (MQ=255)
cGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAAt < 2:80416/139‑1 (MQ=255)
tGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGa < 1:1053555/139‑1 (MQ=255)
gCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGt < 1:83440/139‑1 (MQ=255)
gCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGt < 1:154954/139‑1 (MQ=255)
cTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTg < 1:196380/139‑1 (MQ=255)
aaTTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGtt < 2:293305/139‑1 (MQ=255)
aaTTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGtt < 1:698008/139‑1 (MQ=255)
tttGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAc < 1:1270759/139‑1 (MQ=255)
gCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAcctc < 2:441774/139‑1 (MQ=255)
ttGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAc < 1:1083337/132‑1 (MQ=255)
ttGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAc > 2:1083337/1‑132 (MQ=255)
gCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGGAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCa < 2:1398641/139‑1 (MQ=255)
cATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAg < 1:667545/139‑1 (MQ=255)
tgCAACAGAAGCGTATTGCCAGGACATGCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAAt > 2:853627/1‑81 (MQ=255)
tgCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAAt < 1:853627/81‑1 (MQ=255)
tgCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCa > 1:474132/1‑128 (MQ=255)
tgCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCa < 2:474132/128‑1 (MQ=255)
gCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAat < 1:1383517/139‑1 (MQ=255)
aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGaaaaa < 1:549347/76‑1 (MQ=255)
aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGaaaaa > 2:549347/1‑76 (MQ=255)
aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAg < 1:196361/80‑1 (MQ=255)
aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAg > 2:196361/1‑80 (MQ=255)
aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAcct < 1:859209/112‑1 (MQ=255)
aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACg > 1:700452/1‑127 (MQ=255)
aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACg < 2:700452/127‑1 (MQ=255)
aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAAACCGTGAGGAATACGGGTTAcct > 2:859209/1‑112 (MQ=255)
cAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGc > 2:799764/1‑139 (MQ=255)
gCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATg > 2:1137567/1‑133 (MQ=255)
gCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATg < 1:1137567/133‑1 (MQ=255)
gCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGAtc > 1:880137/1‑139 (MQ=255)
tATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATAc < 2:35893/93‑1 (MQ=255)
tATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATAc > 1:35893/1‑93 (MQ=255)
ggACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa < 2:436859/126‑1 (MQ=255)
ggACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGAAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa > 1:436859/1‑126 (MQ=255)
gACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCg > 2:596407/1‑124 (MQ=255)
gACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCg < 1:596407/124‑1 (MQ=255)
ccccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAg > 1:895195/1‑56 (MQ=255)
ccccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAg < 2:895195/56‑1 (MQ=255)
ccccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATg > 2:534361/1‑116 (MQ=255)
ccccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATg < 1:534361/116‑1 (MQ=255)
ccccGCACCACTGAAACGCCGTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGATTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCaagc > 2:842080/1‑137 (MQ=255)
cccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGtt < 2:967207/93‑1 (MQ=255)
cccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGtt > 1:967207/1‑93 (MQ=255)
caccacTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTgag > 2:983213/1‑68 (MQ=255)
caccacTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTgag < 1:983213/68‑1 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGtt > 2:28513/1‑74 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGtt < 1:28513/74‑1 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAcctc < 2:182725/79‑1 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAcctc > 1:182725/1‑79 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACg > 1:1355944/1‑93 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACg < 2:1355944/93‑1 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa > 2:571097/1‑110 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa < 1:571097/110‑1 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCa < 1:1060056/115‑1 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCa > 2:1060056/1‑115 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTg > 2:660369/1‑139 (MQ=255)
cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTg > 1:1417977/1‑139 (MQ=255)
aaCGGCTTCTTCCCGACCAAAAACGGATTGAAAAAAAAATCGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGTAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTGAtct < 1:956777/139‑1 (MQ=255)
cGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTGATCTCg > 2:1131213/1‑139 (MQ=255)
ccTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGcc > 1:284795/1‑128 (MQ=255)
ccTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGcc < 2:284795/128‑1 (MQ=255)
tcttcCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCa > 1:385049/1‑80 (MQ=255)
tcttcCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCa < 2:385049/80‑1 (MQ=255)
tcCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa > 1:257042/1‑96 (MQ=255)
tcCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa < 2:257042/96‑1 (MQ=255)
|
TCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACTATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTGATCTCG > NC_000913/2475123‑2475374
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
