Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I1 R1 748 32.0 1685426 92.6% 1560704 103.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,490,116 Δ11 bp intergenic (‑53/+15) yjgR ← / ← idnR DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4490116 4490126 11 37 [0] [0] 37 yjgR/idnR DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 44901150 (0.000)37 (1.100) 31/206 0.1 100% intergenic (‑52/+26) yjgR/idnR DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding
?NC_000913 4490127 = 0 (0.000)intergenic (‑64/+14) yjgR/idnR DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding

GATK/CNVnator alignment

N/A