Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
765 |
46.1 |
2269152 |
93.8% |
2128464 |
105.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
821,506 |
G→A |
*238* (TAG→TAA) |
ybhM → |
BAX Inhibitor‑1 family inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 821,506 | 0 | G | A | 100.0%
| 167.6
/ NA
| 52 | *238* (TAG→TAA) | ybhM | BAX Inhibitor‑1 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/22); total (30/22) |
AGTTGTGGAGTCCGGTTCGTTGCGCTTTTACAGGTGCATTAACACTCTATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAGCCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGCCAGCAGCAGTGGGATA > NC_000913/821373‑821629
|
agTTGTGGAGTCCGGTTCGTTGCGCTTTTACAGGTGCATTAACACTCTATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTa < 1:689768/139‑1 (MQ=255)
ggAGTCCGGTTCGTTGCGCTTTTACAGGTGCATTAACACTCTATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca < 1:1006150/139‑1 (MQ=255)
gTCCGGTTCGTTGCGCTTTTACAGGTGCATTAACACTCTATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACAt < 1:479835/139‑1 (MQ=255)
gCATTAACACTCTATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTcaca > 1:970758/1‑139 (MQ=255)
gCATTAACACTCTATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTcaca > 2:1058815/1‑139 (MQ=255)
ctctATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTaaa > 2:630803/1‑110 (MQ=255)
ctctATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTaaa < 1:630803/110‑1 (MQ=255)
ttACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca < 1:1072015/96‑1 (MQ=255)
ttACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca < 1:169660/96‑1 (MQ=255)
ttACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca > 2:1072015/1‑96 (MQ=255)
ttACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca > 2:169660/1‑96 (MQ=255)
ttttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCg < 1:1081783/82‑1 (MQ=255)
ttttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCg > 2:1081783/1‑82 (MQ=255)
ttttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca < 1:581384/90‑1 (MQ=255)
ttttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca > 2:581384/1‑90 (MQ=255)
ttttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGcc > 1:542875/1‑139 (MQ=255)
ttttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGcc > 2:514401/1‑139 (MQ=255)
ttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGaa < 2:843774/100‑1 (MQ=255)
ttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGaa > 1:843774/1‑100 (MQ=255)
ttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCg > 1:406093/1‑139 (MQ=255)
ttATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCg > 1:937646/1‑139 (MQ=255)
aTCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca < 2:74533/86‑1 (MQ=255)
aTCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGca > 1:74533/1‑86 (MQ=255)
aTCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTa > 2:239851/1‑139 (MQ=255)
aCTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCtt > 2:890780/1‑139 (MQ=255)
cTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCttt > 2:34324/1‑139 (MQ=255)
ttGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTc > 1:102954/1‑139 (MQ=255)
ttGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTc > 2:394979/1‑139 (MQ=255)
ttGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTc > 1:65622/1‑139 (MQ=255)
cgATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCaa < 1:1058815/139‑1 (MQ=255)
aTAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTaa < 1:838662/54‑1 (MQ=255)
aTAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTaa > 2:838662/1‑54 (MQ=255)
aTAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACa < 1:239851/139‑1 (MQ=255)
aTAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACa < 2:65622/139‑1 (MQ=255)
cTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGcaca < 1:704506/49‑1 (MQ=255)
cTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGcaca > 2:704506/1‑49 (MQ=255)
cTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCa > 1:595188/1‑139 (MQ=255)
tGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCa > 1:685136/1‑137 (MQ=255)
tGTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCa < 2:685136/137‑1 (MQ=255)
gTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAgcg > 1:74089/1‑139 (MQ=255)
gTCTGGCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAgcg > 1:507239/1‑139 (MQ=255)
gCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACa < 2:675201/119‑1 (MQ=255)
gCAAAGGCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACATCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACa > 1:675201/1‑119 (MQ=255)
ggCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGc > 2:395221/1‑102 (MQ=255)
ggCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGc < 1:395221/102‑1 (MQ=255)
ggCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGcc > 1:969667/1‑131 (MQ=255)
ggCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGcc < 2:969667/131‑1 (MQ=255)
gCATACGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGCCAGCAGCAGt > 1:589439/1‑139 (MQ=255)
aCGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGCCAGCAGCAGTGGGa < 2:970758/139‑1 (MQ=255)
aCGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGCCAGCAGCAGTGGGa > 1:115016/1‑139 (MQ=255)
aCGCGTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGCCAGCAGCAGTGGGa < 2:589439/139‑1 (MQ=255)
gcgTTTTTTTCATTAACCGTTAATGTACATACTAAAGGACGTAACTAAACTTCACGTCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACCGATCAGCGCCAGCAGCAGTGGGATa < 2:81813/139‑1 (MQ=255)
gcgTTTTTTTCATTAACCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGCCAGCAGCAGTGGGATa < 1:394979/139‑1 (MQ=255)
|
AGTTGTGGAGTCCGGTTCGTTGCGCTTTTACAGGTGCATTAACACTCTATTACTATTTTATCGGCTTCTTTGGGATACTTGCCGCGATAGCTATAACGCTTGTCTGGCAAAGGCATACGCGTTTTTTTCATTAGCCGTAAATGCACATACTAAAGAACTTAACTAAACTTCACATCGCCGCTTCATTTTTCGCCCGTAGCTTCTTCGCCTGGCTTTCCAGCAACAGGTAACAGATCAGCGCCAGCAGCAGTGGGATA > NC_000913/821373‑821629
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
