Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F1 I2 R1
|
766 |
55.6 |
2631458 |
94.7% |
2491990 |
109.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
454,434 |
G→A |
intergenic (‑267/‑38) |
yajG ← / → bolA |
putative lipoprotein/stationary‑phase morphogene, transcriptional repressor for mreB, also regulator for dacA, dacC, and ampC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 454,434 | 0 | G | A | 100.0%
| 174.6
/ NA
| 54 | intergenic (‑267/‑38) | yajG/bolA | putative lipoprotein/stationary‑phase morphogene, transcriptional repressor for mreB, also regulator for dacA, dacC, and ampC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/30); total (24/30) |
CTGATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGGATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTGGATGAAAGCTATCGTCACA > NC_000913/454304‑454559
|
cagATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTTGTATTTAAAGGAATGGATGa < 2:771900/137‑1 (MQ=255)
cTGATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGa < 1:1101616/139‑1 (MQ=255)
cTGATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTGAAAGGAATGGATGa < 1:324108/139‑1 (MQ=255)
aTGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACAt > 2:354994/1‑139 (MQ=255)
ggCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGc < 2:715128/139‑1 (MQ=255)
tgtgTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTg > 1:1034327/1‑139 (MQ=255)
tgtgTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTg < 1:760758/139‑1 (MQ=255)
gtgtTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGt < 2:359119/139‑1 (MQ=255)
ttCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCgga < 2:1034327/139‑1 (MQ=255)
tCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCggag < 1:1071615/139‑1 (MQ=255)
tCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCggag < 1:433969/139‑1 (MQ=255)
tttAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGata < 2:305637/139‑1 (MQ=255)
tttAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGata > 2:923391/1‑139 (MQ=255)
tttAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGata > 1:684360/1‑139 (MQ=255)
aaTCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTc < 2:256834/139‑1 (MQ=255)
tCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGt < 1:904545/139‑1 (MQ=255)
cATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGgaggag < 2:475090/119‑1 (MQ=255)
cATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGgaggag > 1:475090/1‑119 (MQ=255)
aCGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGc > 2:395156/1‑139 (MQ=255)
ttGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGAt > 2:727418/1‑139 (MQ=255)
tGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTATCGGAGGAGATATTTCATGATGATACGTGAGCGGATa > 1:1211652/1‑139 (MQ=255)
aCGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATaga > 2:439744/1‑139 (MQ=255)
cAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTc > 1:1219034/1‑106 (MQ=255)
cAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTc < 2:1219034/106‑1 (MQ=255)
ggACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCa > 2:532722/1‑82 (MQ=255)
ggACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCa < 1:532722/82‑1 (MQ=255)
ggACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATagaaga > 2:741603/1‑130 (MQ=255)
ggACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATagaaga < 1:741603/130‑1 (MQ=255)
gACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACAtctc < 2:74630/80‑1 (MQ=255)
gACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACAtctc > 1:74630/1‑80 (MQ=255)
aCGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAggg > 2:561130/1‑139 (MQ=255)
aaaCCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGggcgg > 1:47534/1‑139 (MQ=255)
cTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGtt < 2:684360/139‑1 (MQ=255)
aaaTATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTcc < 1:354994/139‑1 (MQ=255)
tgttgtTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTg > 2:627308/1‑70 (MQ=255)
tgttgtTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTg < 1:627308/70‑1 (MQ=255)
aaGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGACGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTc > 2:385299/1‑139 (MQ=255)
aGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCg < 1:561130/139‑1 (MQ=255)
cAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGAt < 2:418888/93‑1 (MQ=255)
cAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGAt > 1:418888/1‑93 (MQ=255)
cAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAAt < 1:227929/104‑1 (MQ=255)
cAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAAt > 2:227929/1‑104 (MQ=255)
aaTGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAagtag < 1:727418/139‑1 (MQ=255)
aTGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGtt > 2:610422/1‑115 (MQ=255)
aTGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGtt < 1:610422/115‑1 (MQ=255)
ggAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTgg < 2:168950/139‑1 (MQ=255)
aaaGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGgaga > 1:123118/1‑53 (MQ=255)
aaaGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGgaga < 2:123118/53‑1 (MQ=255)
gctgCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTGGATGAAAGCTATCg < 2:1211652/136‑1 (MQ=255)
gCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTcc < 1:936146/99‑1 (MQ=255)
gCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTcc > 2:936146/1‑99 (MQ=255)
cTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGggcg < 2:597019/91‑1 (MQ=255)
cTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGggcg > 1:597019/1‑91 (MQ=255)
tAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTGGATGAAAGCTATCGTcaca > 1:267086/1‑139 (MQ=255)
|
CTGATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGGATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTGGATGAAAGCTATCGTCACA > NC_000913/454304‑454559
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
