Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I1 R1
|
778 |
68.7 |
3228504 |
93.4% |
3015422 |
109.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,521,048 |
A→G |
V673A (GTC→GCC) |
yncD ← |
putative iron outer membrane transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,521,048 | 0 | A | G | 98.1%
| 365.4
/ NA
| 103 | V673A (GTC→GCC) | yncD | putative iron outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (49/52); total (50/53) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 103 total aligned reads displayed.
GCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGACGGCGCTTTTGCCG > NC_000913/1520912‑1521180
|
gCAATACAATCGTTAAAGTAAATGCCCGGCAAGTACCGGGCATCAAGGTAATTACTCAAAGCTCCACGCAATATCCATGCCGACACCATAATTTCTGCCGGTCGAACGTTCGTAATATCGCCCGTTTGACTCATTGACa < 1:1095209/139‑1 (MQ=255)
tACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGa < 1:805479/139‑1 (MQ=255)
tACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGa < 2:970107/139‑1 (MQ=255)
ttAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCa > 2:249015/1‑139 (MQ=255)
aaaGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAAc > 1:1265391/1‑139 (MQ=255)
aaaGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAAc > 1:556768/1‑139 (MQ=255)
aaTGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCa > 2:1457276/1‑131 (MQ=255)
aaTGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCa < 1:1457276/131‑1 (MQ=255)
aTGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCt > 2:1327809/1‑139 (MQ=255)
gCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCttt > 1:1446558/1‑139 (MQ=255)
gCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCCTTGACAATGACAGAAAAAACGTATTCTTTATCGa > 1:17424/1‑139 (MQ=255)
gCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTAtt > 2:678593/1‑130 (MQ=255)
gCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAAc > 1:286383/1‑114 (MQ=255)
gCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAAc < 2:286383/114‑1 (MQ=255)
gCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCg > 2:112228/1‑139 (MQ=255)
gCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCg > 2:292091/1‑139 (MQ=255)
aTCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGac > 2:145533/1‑139 (MQ=255)
aaGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACg > 2:1248644/1‑139 (MQ=255)
cAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATc < 2:1446558/139‑1 (MQ=255)
aaaTCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATcc > 2:1521074/1‑139 (MQ=255)
cACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGaa > 2:176165/1‑84 (MQ=255)
cACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGaa < 1:176165/84‑1 (MQ=255)
aCGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTaa > 2:131842/1‑139 (MQ=255)
aCGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTaa > 2:877224/1‑139 (MQ=255)
gCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAAt < 2:1265391/139‑1 (MQ=255)
gCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAAt < 1:89932/139‑1 (MQ=255)
tatTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAAcc > 2:1436347/1‑79 (MQ=255)
tatTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAAcc < 1:1436347/79‑1 (MQ=255)
tatTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAAc > 2:1456750/1‑82 (MQ=255)
tatTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAAc < 1:1456750/82‑1 (MQ=255)
atTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATc < 1:660669/123‑1 (MQ=255)
atTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCGTTATCGAATAAATTATCGACACGACCAAATAAATc > 2:660669/1‑123 (MQ=255)
ttCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGt > 2:736247/1‑139 (MQ=255)
cATGCGGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTaa < 1:551421/139‑1 (MQ=255)
aTGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAt < 1:877224/139‑1 (MQ=255)
aTGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAt < 1:1248644/139‑1 (MQ=255)
aTGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAt < 2:763894/139‑1 (MQ=255)
aTGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAt < 1:450572/139‑1 (MQ=255)
aTGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAt < 1:249015/139‑1 (MQ=255)
tGCCGACTCCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACATAACCAACGTATTCTTTATCGTATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAtt < 2:17424/139‑1 (MQ=255)
tGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCca < 2:854104/120‑1 (MQ=255)
tGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCca > 1:854104/1‑120 (MQ=255)
tGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAtt < 1:134987/139‑1 (MQ=255)
gCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGa < 2:138157/106‑1 (MQ=255)
gCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGa > 1:138157/1‑106 (MQ=255)
ccGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGt > 1:1264588/1‑139 (MQ=255)
gACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGaa > 1:915265/1‑67 (MQ=255)
gACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGaa < 2:915265/67‑1 (MQ=255)
gACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAAt > 2:392728/1‑88 (MQ=255)
gACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAAt < 1:392728/88‑1 (MQ=255)
gACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTAt > 1:811078/1‑139 (MQ=255)
gACACCATAATTTCGTCCGGGCG‑AGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGAc < 1:743238/103‑1 (MQ=255)
gACACCATAATTTCGTCCGGGCG‑AGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGAc > 2:743238/1‑103 (MQ=255)
cacCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCt > 2:734495/1‑77 (MQ=255)
cacCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCt < 1:734495/77‑1 (MQ=255)
cacCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTg < 2:719354/134‑1 (MQ=255)
cacCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTg > 1:719354/1‑134 (MQ=255)
cATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATa < 1:1113893/84‑1 (MQ=255)
cATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATa > 2:1113893/1‑84 (MQ=255)
cATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACg > 2:72090/1‑97 (MQ=255)
cATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACg < 1:72090/97‑1 (MQ=255)
tAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATAcc < 2:1264588/139‑1 (MQ=255)
cGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGa > 2:783862/1‑139 (MQ=255)
tCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATc < 1:864527/99‑1 (MQ=255)
tCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATc < 1:276651/99‑1 (MQ=255)
tCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATc > 2:864527/1‑99 (MQ=255)
tCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATc > 2:276651/1‑99 (MQ=255)
tCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAt < 2:507430/119‑1 (MQ=255)
tCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAAt > 1:507430/1‑119 (MQ=255)
gggCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAg < 1:148294/139‑1 (MQ=255)
ggCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCca > 1:230769/1‑97 (MQ=255)
ggCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCca < 1:1578021/97‑1 (MQ=255)
ggCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCca < 2:230769/97‑1 (MQ=255)
gCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTGTCAACACGACCAAATAAATCca > 2:987754/1‑96 (MQ=255)
gCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCca < 1:987754/96‑1 (MQ=255)
gCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGcc < 2:556768/139‑1 (MQ=255)
ggTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCcgacga < 2:811078/139‑1 (MQ=255)
ggTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCcgacga < 1:145533/139‑1 (MQ=255)
ggTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCcgacga < 2:823789/139‑1 (MQ=255)
ggTTCGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCcgacga < 1:783862/139‑1 (MQ=255)
cGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGAc > 2:1596681/1‑75 (MQ=255)
cGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGAc < 1:184081/75‑1 (MQ=255)
cGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGAc < 1:1596681/75‑1 (MQ=255)
cGTAATATCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGAc > 2:184081/1‑75 (MQ=255)
tCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGAc > 1:1418838/1‑139 (MQ=255)
tCGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGAc > 1:861870/1‑139 (MQ=255)
cGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGAc < 2:176933/138‑1 (MQ=255)
cGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGAc > 1:176933/1‑138 (MQ=255)
cGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGACg > 2:965025/1‑139 (MQ=255)
cGCCCGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAAACCACAGTTAAATTGTGGTAATTGTATGTATACCCGGTGAATAAGCCGACGAGAGTATAAGACg > 2:1011448/1‑139 (MQ=255)
cccGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTa > 1:645332/1‑43 (MQ=255)
cccGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTa < 2:645332/43‑1 (MQ=255)
cccGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCca < 2:1048887/77‑1 (MQ=255)
cccGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCca > 1:1048887/1‑77 (MQ=255)
cccGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCcgac > 2:809218/1‑123 (MQ=255)
cccGTTTGACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCcgac < 1:809218/123‑1 (MQ=255)
gACTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGACGGCGCTTTTg < 1:131842/139‑1 (MQ=255)
aCTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGACGGCGCTTTTGc < 1:532888/139‑1 (MQ=255)
cTCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGACGGCGCTTTTGcc > 2:1350186/1‑139 (MQ=255)
tCATTGGCAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGACGGCGCTTTTGCCg < 2:1418838/139‑1 (MQ=255)
|
GCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGACACGACCAAATAAATCCACAGTTAAATTGTGGTAATTGTATTTATACCCGGTGAATAAGCCGACGAGAGTATAAGACGGCGCTTTTGCCG > NC_000913/1520912‑1521180
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
