Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F1 I1 R1 778 68.7 3228504 93.4% 3015422 109.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,059,964 C→T *317* (TAG→TAA)  cbl ← ssuEADCB/tauABCD operon transcriptional activator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,059,9640CT100.0% 223.3 / NA 69*317* (TAG→TAA) cblssuEADCB/tauABCD operon transcriptional activator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (34/35);  total (34/35)

TAAGATGTGCCTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGCTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACAAAGTTCCAGAAAGCGCCAGACATAGTTACGCTGAAGTTGTCCTCGCTTC  >  NC_000913/2059829‑2060093
                                                                                                                                        |                                                                                                                                 
tAAGATGTGCCTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTtat                                                                                                                                <  2:1480866/139‑1 (MQ=255)
tAAGATGTGCCTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTtat                                                                                                                                <  2:626182/139‑1 (MQ=255)
     tgtgCCTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTg                                                                                                                           <  2:701211/139‑1 (MQ=255)
         ccTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATaa                                                                                                                       >  1:1104367/1‑139 (MQ=255)
         ccTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATaa                                                                                                                       >  1:1144251/1‑139 (MQ=255)
         ccTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATaa                                                                                                                       >  2:77547/1‑139 (MQ=255)
         ccTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATaa                                                                                                                       >  2:639627/1‑139 (MQ=255)
              acaacGATTCCTCTGTTGTTTAGTCGGGAGAAAGGCGGGCTGTTAAACCGTATTTTTCTGGTTTGCGGACCGGCCGAGGGGGCCAAATTCTGGAAAAACCCCCTTTT‑TAGCGGGGTTTTTGTTttattttttttttata                                                                                                                  >  1:467198/1‑127 (MQ=255)
              acaacGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAAt                                                                                                                  <  1:77547/139‑1 (MQ=255)
              acaacGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAAt                                                                                                                  <  1:538335/139‑1 (MQ=255)
                 acGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTc                                                                                                               <  2:1104367/139‑1 (MQ=255)
                 acGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTc                                                                                                               <  1:243339/139‑1 (MQ=255)
                       ccTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTc                                                                                                         >  1:75237/1‑139 (MQ=255)
                           tGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAAt                                                                                                                      <  1:1381664/122‑1 (MQ=255)
                           tGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAAt                                                                                                                      >  2:1381664/1‑122 (MQ=255)
                               gTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCttt                                                                                                 <  2:1144251/139‑1 (MQ=255)
                                ttCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCTCTGGTTCGACTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCGAGCTTTTATGGCGGGAGTTTTGTTATATATGATAATCAATTTCCTCTTCACTGCTATc                                                                                                >  1:1304538/1‑139 (MQ=21)
                                ttCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTc                                                                                                >  1:1370767/1‑139 (MQ=255)
                                  cAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCa                                                                                                                    <  2:432459/117‑1 (MQ=255)
                                  cAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCa                                                                                                                    >  1:432459/1‑117 (MQ=255)
                                  cAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCAc                                                                                                       >  1:1498240/1‑130 (MQ=255)
                                  cAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCAc                                                                                                       <  2:1498240/130‑1 (MQ=255)
                                  cAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCa                                                                                              >  1:1119264/1‑139 (MQ=255)
                                  cAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCa                                                                                              >  1:1180702/1‑139 (MQ=255)
                                     tCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCa                                                                                           >  2:1264591/1‑139 (MQ=255)
                                       ggTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAAt                                                                                                                      >  1:1392357/1‑110 (MQ=255)
                                       ggTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAAt                                                                                                                      <  2:1392357/110‑1 (MQ=255)
                                       ggTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCAcc                                                                                         <  1:1264591/139‑1 (MQ=255)
                                       ggTAGAACGACGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTc                                                                                                               <  2:829102/117‑1 (MQ=255)
                                       ggTAGAACGACGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTc                                                                                                               >  1:829102/1‑117 (MQ=255)
                                                 cggACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGa                                                                               >  1:610695/1‑139 (MQ=255)
                                                 cggACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGC‑TTCCATCACCTGCCGCTTGat                                                                              <  1:639627/139‑1 (MQ=255)
                                                  ggACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGat                                                                              <  2:1370767/139‑1 (MQ=255)
                                                   gACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGata                                                                             >  2:54985/1‑139 (MQ=255)
                                                              cGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGa                                                                  <  1:1217131/139‑1 (MQ=255)
                                                                tATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTgg                                                                  <  1:95902/137‑2 (MQ=255)
                                                                tATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGa                                                                  >  2:95902/1‑137 (MQ=255)
                                                                tATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACa                                                                >  1:1094438/1‑139 (MQ=255)
                                                                  tGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGatat                                                                            >  2:1596126/1‑125 (MQ=255)
                                                                  tGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGatat                                                                            <  1:1596126/125‑1 (MQ=255)
                                                                  tGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGt                                                              >  1:985509/1‑139 (MQ=255)
                                                                   gTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTc                                                             <  2:1180702/139‑1 (MQ=255)
                                                                   gTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTc                                                             <  1:1314916/139‑1 (MQ=255)
                                                                     cACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCt                                                           <  2:1094438/139‑1 (MQ=255)
                                                                      aCTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAAt                                                                                                                      >  1:1384617/1‑79 (MQ=255)
                                                                      aCTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAAt                                                                                                                      <  2:1384617/79‑1 (MQ=255)
                                                                       cTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGat                                                                              >  1:712187/1‑118 (MQ=255)
                                                                       cTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGat                                                                              <  2:712187/118‑1 (MQ=255)
                                                                         ggTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGCCCTGCAt                                                       <  1:1477332/139‑1 (MQ=255)
                                                                          gTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTtat                                                                                                                                >  1:601160/1‑65 (MQ=255)
                                                                          gTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTtat                                                                                                                                <  2:601160/65‑1 (MQ=255)
                                                                          gTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCAtt                                                      >  1:389361/1‑139 (MQ=255)
                                                                               aGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTtat                                                                                                                                >  1:367923/1‑60 (MQ=255)
                                                                               aGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTtat                                                                                                                                <  2:367923/60‑1 (MQ=255)
                                                                                    aGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCa                                                                                                        >  2:769342/1‑79 (MQ=255)
                                                                                    aGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCa                                                                                                        <  1:769342/79‑1 (MQ=255)
                                                                                     gTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTg                                                                                                                           <  2:75280/59‑1 (MQ=255)
                                                                                     gTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTg                                                                                                                           >  1:75280/1‑59 (MQ=255)
                                                                                     gTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGc                                                                                                    <  2:651106/82‑1 (MQ=255)
                                                                                     gTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGc                                                                                                    >  1:651106/1‑82 (MQ=255)
                                                                                     gTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCa                                                        <  1:826907/126‑1 (MQ=255)
                                                                                     gTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCa                                                        >  2:826907/1‑126 (MQ=255)
                                                                                     gTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACa                                                   <  2:188075/131‑1 (MQ=255)
                                                                                     gTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACa                                                   >  1:188075/1‑131 (MQ=255)
                                                                                          a‑ggagCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTc                                                             >  1:1325694/1‑116 (MQ=255)
                                                                                          a‑ggagCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTc                                                             <  2:1325694/116‑1 (MQ=255)
                                                                                                                         ataGCGGGATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACAAAGTTCCAGAAAGCGCCAGACATAGTTACGCTGAAGTTGTCCt        <  2:75237/139‑1 (MQ=255)
                                                                                                                              gggATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACAAAGTTCCAGAAAgcgc                                   <  2:1172745/107‑1 (MQ=255)
                                                                                                                              gggATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACAAAGTTCCAGAAAgcgc                                   >  1:1172745/1‑107 (MQ=255)
                                                                                                                               ggATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACAAAGTTCCAGAAAGCGCCAGACATAGTTACGCTGAAGTTGTCCTCGCTTc  >  2:421722/1‑139 (MQ=255)
                                                                                                                               ggATTTTTGTTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACAAAGTTCCAGAAAGCGCCAGACATAGTTACGCTGAAGTTGTCCTCGCTTc  >  2:1192464/1‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                 
TAAGATGTGCCTCAACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGA‑GGAGCCAAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGCTATATCTGATAATCAATTTCCTCTTCACTGCTTTCCATCACCTGCCGCTTGATATCCTCAACTGACAGTCCTGCATTACAAAGTTCCAGAAAGCGCCAGACATAGTTACGCTGAAGTTGTCCTCGCTTC  >  NC_000913/2059829‑2060093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A