Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F1 I1 R1 778 68.7 3228504 93.4% 3015422 109.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,525,917 Δ9 bp intergenic (+26/+5) yfeN → / ← yfeR putative outer membrane protein/transcriptional regulator of yefH

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2525917 2525925 9 77 [0] [0] 66 yfeN/yfeR putative outer membrane protein/transcriptional regulator of yefH

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 25259160 (0.000)66 (0.950) 43/218 0.4 100% intergenic (+25/+14) yfeN/yfeR putative outer membrane protein/transcriptional regulator of yefH
?NC_000913 2525926 = 0 (0.000)intergenic (+35/+4) yfeN/yfeR putative outer membrane protein/transcriptional regulator of yefH

GATK/CNVnator alignment

N/A