Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F1 I1 R1 770 68.5 3470224 91.7% 3182195 103.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,631,593 G→A W287* (TGG→TGA)  slt → lytic murein transglycosylase, soluble

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,631,5930GA100.0% 228.2 / NA 71W287* (TGG→TGA) sltlytic murein transglycosylase, soluble
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (38/33);  total (38/33)

CAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGATCGTCGCGGCCTG  >  NC_000913/4631459‑4631725
                                                                                                                                      |                                                                                                                                    
cAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGtt                                                                                                                                  >  2:751746/1‑139 (MQ=255)
         gcggTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCa                                                                                                                         >  1:1371969/1‑139 (MQ=255)
           ggTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAAc                                                                                                                       <  2:1081870/139‑1 (MQ=255)
             tGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGa                                                                                                                     >  1:453302/1‑139 (MQ=255)
             tGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGa                                                                                                                     <  2:1371969/139‑1 (MQ=255)
                          tgtgGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAg                                                                                                        >  1:812051/1‑139 (MQ=255)
                          tgtgGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAg                                                                                                        <  1:518997/139‑1 (MQ=255)
                          tgtgGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAg                                                                                                        <  2:453302/139‑1 (MQ=255)
                              gcgcGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAgg                                                                                                    >  1:1300752/1‑139 (MQ=255)
                                         tGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgcgc                                                                                         >  2:1637809/1‑139 (MQ=255)
                                           cTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGa                                                                                       <  2:1300752/139‑1 (MQ=255)
                                            tGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGAt                                                                                      <  1:73864/139‑1 (MQ=255)
                                               gaATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGAc                                                                                   >  2:671211/1‑139 (MQ=255)
                                                  tGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGcc                                                                                >  2:252853/1‑139 (MQ=255)
                                                        gCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATg                                                                          <  1:751746/139‑1 (MQ=255)
                                                        gCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATg                                                                          >  1:1211362/1‑139 (MQ=255)
                                                           gatgatCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATgcgc                                                                       <  2:1211362/139‑1 (MQ=255)
                                                            atgatCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGc                                                                                                       >  1:1244310/1‑106 (MQ=255)
                                                            atgatCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATgg                                                                                            <  2:574456/117‑1 (MQ=255)
                                                            atgatCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATgg                                                                                            >  1:574456/1‑117 (MQ=255)
                                                            atgatCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCt                                                                      >  2:1446209/1‑139 (MQ=255)
                                                            atgatCCCATCGCTTGCCCAGGCGCAGCAACTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTAATGGGCAACGATGTCACCGACGAGc                                                                                                       <  2:1244310/106‑1 (MQ=255)
                                                                 cccATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCaa                                                                 >  2:126916/1‑139 (MQ=255)
                                                                   cATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTg                                                                                                                                >  2:1249566/1‑74 (MQ=255)
                                                                   cATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTg                                                                                                                                <  1:1249566/74‑1 (MQ=255)
                                                                   cATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATc                                                               >  2:1078646/1‑139 (MQ=255)
                                                                      cGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAAt                                                                <  2:1285189/135‑1 (MQ=255)
                                                                      cGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAAt                                                                >  1:1285189/1‑135 (MQ=255)
                                                                      cGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTAc                                                            >  1:533722/1‑139 (MQ=255)
                                                                          tGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGa                                                                                    >  1:460478/1‑111 (MQ=255)
                                                                          tGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGa                                                                                    <  2:460478/111‑1 (MQ=255)
                                                                           gCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACcgacga                                                                                                         <  2:664446/89‑1 (MQ=255)
                                                                           gCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACcgacga                                                                                                         >  1:664446/1‑89 (MQ=255)
                                                                                ggCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgcg                                                                                          <  1:1395321/99‑1 (MQ=255)
                                                                                ggCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgcg                                                                                          >  2:1395321/1‑99 (MQ=255)
                                                                                ggCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTAtt                                                  >  2:1295365/1‑139 (MQ=255)
                                                                                     agcagcTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACg                                             <  2:533722/139‑1 (MQ=255)
                                                                                     agcagcTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACg                                             >  2:1362316/1‑139 (MQ=255)
                                                                                     agcagcTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACg                                             <  2:246896/139‑1 (MQ=255)
                                                                                     agcagcTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACg                                             <  1:1078646/139‑1 (MQ=255)
                                                                                      gcagcTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGc                                            <  1:1730423/139‑1 (MQ=255)
                                                                                               tGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGa                                   >  2:1220839/1‑139 (MQ=255)
                                                                                                gAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGaa                                  <  1:126916/139‑1 (MQ=255)
                                                                                                 aaGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGa                                                                                                                     <  2:1006806/55‑1 (MQ=255)
                                                                                                 aaGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGa                                                                                                                     >  1:1006806/1‑55 (MQ=255)
                                                                                                 aaGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAAt                                 >  1:1524902/1‑139 (MQ=255)
                                                                                                  aGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATg                                <  1:1220839/139‑1 (MQ=255)
                                                                                                    aTCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGgc                              >  2:1534033/1‑139 (MQ=255)
                                                                                                    aTCAGATTCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGAT‑GGCAAAGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTTGCTTATTGAACGCCGTGTACGAATGgcg                             >  1:142912/1‑139 (MQ=255)
                                                                                                           tCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACcg                                                                                                             >  2:984304/1‑53 (MQ=255)
                                                                                                           tCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACcg                                                                                                             <  1:984304/53‑1 (MQ=255)
                                                                                                           tCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgc                                                                                           <  1:1441078/71‑1 (MQ=255)
                                                                                                           tCAGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgc                                                                                           >  2:1441078/1‑71 (MQ=255)
                                                                                                             aGGAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCAc                     >  2:202980/1‑139 (MQ=255)
                                                                                                              ggAGCTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCAcc                    >  1:485763/1‑139 (MQ=255)
                                                                                                              ggAGCTACGCGATATAGTCGCCTGACGTTTAATCGGGAACGACGGCAGCGGCGAGCAGGAGGAAGGGCGCGATGACCACCTGACGCGCCCGAAGACTACATCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCAcc                    >  2:1244399/1‑139 (MQ=255)
                                                                                                                  cTGCGCGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCg                >  1:156955/1‑139 (MQ=255)
                                                                                                                    gcgcGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgc                                                                                           <  1:281603/62‑1 (MQ=255)
                                                                                                                    gcgcGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgc                                                                                           >  2:281603/1‑62 (MQ=255)
                                                                                                                    gcgcGATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGAt              <  1:252853/139‑1 (MQ=255)
                                                                                                                     cgcgATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTAc                                                            <  2:1386039/92‑1 (MQ=255)
                                                                                                                     cgcgATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTAc                                                            >  1:1386039/1‑92 (MQ=255)
                                                                                                                        gATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGAtcgtc          <  2:1524902/139‑1 (MQ=255)
                                                                                                                        gATATCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGAtcgtc          <  1:1295365/139‑1 (MQ=255)
                                                                                                                         atatCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGAtcgtcg         <  1:671211/139‑1 (MQ=255)
                                                                                                                          tatCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTAGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGATCGTcgc        >  2:1097829/1‑139 (MQ=255)
                                                                                                                           atCGTCGCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGATCGTcgcg       <  1:140054/139‑1 (MQ=255)
                                                                                                                             cgtcgCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGAACGTCGCGGc     >  2:640153/1‑139 (MQ=255)
                                                                                                                                cgCCTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGATCGTCGCGGCCTg  <  1:1446209/139‑1 (MQ=255)
                                                                                                                                  ccTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATg                                <  2:6913/107‑1 (MQ=255)
                                                                                                                                  ccTGACGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATg                                >  1:6913/1‑107 (MQ=255)
                                                                                                                                      |                                                                                                                                    
CAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAATCTACTTCGCTTATTGAACGCCGTGTACGAATGGCGCTTGGCACCGGCGATCGTCGCGGCCTG  >  NC_000913/4631459‑4631725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A