Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F1 I1 R1 759 65.2 3386260 90.7% 3071337 101.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,691,192 G→A Q447Q (CAG→CAA)  ydgA → DUF945 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,691,1920GA100.0% 283.6 / NA 86Q447Q (CAG→CAA) ydgADUF945 family protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (41/45);  total (41/45)

CTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAGATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGC  >  NC_000913/1691067‑1691316
                                                                                                                              |                                                                                                                            
cTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGa                                                                                                                 <  1:575567/139‑1 (MQ=255)
   aCCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGacca                                                                                                              <  2:1556308/139‑1 (MQ=255)
     cATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCt                                                                                                                   <  1:521310/132‑1 (MQ=255)
     cATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATAAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCt                                                                                                                   >  2:521310/1‑132 (MQ=255)
         ccGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGc                                                                                                        <  1:530266/139‑1 (MQ=255)
                  atGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATa                                                                                               >  2:488702/1‑139 (MQ=255)
                    ggCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAAt                                                                                                <  2:716815/136‑1 (MQ=255)
                    ggCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAAt                                                                                                >  1:716815/1‑136 (MQ=255)
                    ggCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATAcc                                                                                             <  1:488702/139‑1 (MQ=255)
                    ggCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATAcc                                                                                             >  1:1111141/1‑139 (MQ=255)
                      cAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCa                                                                                                       <  1:272024/127‑1 (MQ=255)
                      cAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCa                                                                                                       >  2:272024/1‑127 (MQ=255)
                      cAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGa                                                                                                    >  2:994807/1‑130 (MQ=255)
                      cAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGa                                                                                                    <  1:994807/130‑1 (MQ=255)
                      cAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCAt                                                                                           <  1:533714/139‑1 (MQ=255)
                         cTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGacca                                                                                                              <  2:1281907/117‑1 (MQ=255)
                         cTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGacca                                                                                                              >  2:919585/1‑117 (MQ=255)
                         cTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGacca                                                                                                              <  1:919585/117‑1 (MQ=255)
                         cTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGacca                                                                                                              >  1:1281907/1‑117 (MQ=255)
                           gAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATcacca                                                                                      <  2:1044103/139‑1 (MQ=255)
                               ttATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAg                                                                                  >  1:1682516/1‑139 (MQ=255)
                                 aTGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGcc                                                                                <  2:1471551/139‑1 (MQ=255)
                                        aGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGa                                                                                                                 >  1:1482997/1‑99 (MQ=255)
                                        aGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGa                                                                                                                 <  2:1482997/99‑1 (MQ=255)
                                        aGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAata                                                                         >  1:1044383/1‑139 (MQ=255)
                                          gTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGt                                                                                                                          >  2:1097820/1‑88 (MQ=255)
                                          gTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGt                                                                                                                          <  1:1097820/88‑1 (MQ=255)
                                          gTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATg                                                                       >  1:1100939/1‑139 (MQ=255)
                                            aGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCt                                                                     <  1:1012602/139‑1 (MQ=255)
                                              cGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTaa                                                                   >  1:1583891/1‑139 (MQ=255)
                                                aaGCTGGAAGGTTATCAGGAAGATGAAGCGAAAAAACTGGTGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACa                                                                                                  >  1:1032492/1‑106 (MQ=255)
                                                aaGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTc                                                                                                                        >  2:240373/1‑84 (MQ=255)
                                                aaGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTc                                                                                                                        <  1:240373/84‑1 (MQ=255)
                                                aaGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACa                                                                                                  <  2:1032492/106‑1 (MQ=255)
                                                  gCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGt                                                               <  2:1682516/139‑1 (MQ=255)
                                                   cTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTc                                                              >  1:293779/1‑139 (MQ=255)
                                                    tGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCa                                                             >  1:279830/1‑139 (MQ=255)
                                                     ggAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAg                                                            >  2:531468/1‑139 (MQ=255)
                                                      gAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCCAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGa                                                           <  2:1100939/139‑1 (MQ=255)
                                                      gAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGa                                                           <  2:1583891/139‑1 (MQ=255)
                                                       aaGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGAt                                                          <  1:494173/139‑1 (MQ=255)
                                                             aTCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGtt                                                    >  2:384924/1‑139 (MQ=255)
                                                             aTCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GAGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGtt                                                    >  1:1020085/1‑139 (MQ=255)
                                                                 ggAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGc                                                                                 <  2:1193185/106‑1 (MQ=255)
                                                                 ggAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGc                                                                                 >  1:1193185/1‑106 (MQ=255)
                                                                    aGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAATGGGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATgg                                              >  2:1130532/1‑139 (MQ=255)
                                                                    aGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GAGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATggg                                             <  2:1020085/139‑1 (MQ=255)
                                                                     gATCTAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGc                                                                                 <  2:1013090/102‑1 (MQ=255)
                                                                     gATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGc                                                                                 >  1:1013090/1‑102 (MQ=255)
                                                                     gATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACgg                                                                >  1:651573/1‑119 (MQ=255)
                                                                     gATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACgg                                                                <  2:651573/119‑1 (MQ=255)
                                                                        cAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGa                                         >  1:1456150/1‑139 (MQ=255)
                                                                         aaGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCAt                                                                                           <  2:1450654/88‑1 (MQ=255)
                                                                         aaGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCAt                                                                                           >  1:1450654/1‑88 (MQ=255)
                                                                          aGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGt                                                                                                                          >  2:467421/1‑56 (MQ=255)
                                                                          aGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGt                                                                                                                          <  1:467421/56‑1 (MQ=255)
                                                                          aGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGa                                                                                                    <  1:1297825/78‑1 (MQ=255)
                                                                          aGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGa                                                                                                    >  2:1297825/1‑78 (MQ=255)
                                                                          aGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAg                                                                                  >  2:1247229/1‑96 (MQ=255)
                                                                          aGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAg                                                                                  <  1:1247229/96‑1 (MQ=255)
                                                                            cGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGa                                                                                                    <  2:1607599/76‑1 (MQ=255)
                                                                            cGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGa                                                                                                    >  1:1607599/1‑76 (MQ=255)
                                                                            cGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTaa                                                  >  1:20838/1‑126 (MQ=255)
                                                                            cGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTaa                                                  <  2:20838/126‑1 (MQ=255)
                                                                             gAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATg                                    >  1:1469344/1‑139 (MQ=255)
                                                                                aaaaCTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGt                                                               >  2:603497/1‑109 (MQ=255)
                                                                                aaaaCTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGt                                                               <  1:603497/109‑1 (MQ=255)
                                                                                aaaaCTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCg                                 >  1:334785/1‑139 (MQ=255)
                                                                                    cTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTag                             <  2:1469344/139‑1 (MQ=255)
                                                                                      ggCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGac                                                                                                                <  2:150976/54‑1 (MQ=255)
                                                                                      ggCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGac                                                                                                                >  1:150976/1‑54 (MQ=255)
                                                                                        cGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTagaaga                         <  1:384924/139‑1 (MQ=255)
                                                                                            aCAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATcacca                                                                                      <  2:1373884/74‑1 (MQ=255)
                                                                                            aCAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATcacca                                                                                      >  1:1373884/1‑74 (MQ=255)
                                                                                                 aaGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGc                                                                             >  1:478383/1‑78 (MQ=255)
                                                                                                 aaGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGc                                                                             <  2:478383/78‑1 (MQ=255)
                                                                                                 aaGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTgg                <  2:293779/139‑1 (MQ=255)
                                                                                                 aaGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTgg                <  1:531468/139‑1 (MQ=255)
                                                                                                  aGTTGAAGGTGCATCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGc               <  2:1456150/139‑1 (MQ=255)
                                                                                                               tCAGCAAT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGc  <  2:279830/139‑1 (MQ=255)
                                                                                                                     aT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACgg                                                                >  1:1177969/1‑71 (MQ=255)
                                                                                                                     aT‑GGGGCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACgg                                                                <  2:1177969/71‑1 (MQ=255)
                                                                                                                        ggggCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTg        >  2:1676608/1‑125 (MQ=255)
                                                                                                                        ggggCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTg        <  1:1676608/125‑1 (MQ=255)
                                                                                                                         gggCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCaa                                                                           >  2:868947/1‑57 (MQ=255)
                                                                                                                         gggCAAATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCaa                                                                           <  1:868947/57‑1 (MQ=255)
                                                                                                                              |                                                                                                                            
CTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAAT‑GGGGCAGATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGC  >  NC_000913/1691067‑1691316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A