Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
781 |
46.9 |
2231650 |
93.5% |
2086592 |
109.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,972,647 |
(C)5→6 |
coding (45/1662 nt) |
tar ← |
methyl‑accepting chemotaxis protein II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,972,642 | 1 | . | C | 100.0%
| 86.7
/ NA
| 25 | V17G (GTA→GGA) | tar | methyl‑accepting chemotaxis protein II |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (11/14); total (11/14) |
TTAAATCCCAGGTTGACGTCAGCTCGCCCTGCTGTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑CCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCG > NC_000913/1972514‑1972768
|
ttAAATCCCAGGTTGACGTCAGCTCGCCCTGCTGTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑ccccccagca < 2:599703/139‑6 (MQ=255)
ttAAATCCCAGGTTGACGTCAGCTCGCCCTGCTGTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑ccccccagca < 1:572499/139‑6 (MQ=255)
ggTTGACGTCAGCTCGCCCTGCTGTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCaa < 1:1017877/139‑1 (MQ=255)
ggTTGACGTCAGCTCGCCCTGCTGTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCaa < 2:542426/139‑1 (MQ=255)
cGTCAGCTCGCCCTGCTGTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑c > 1:319235/1‑114 (MQ=255)
cGTCAGCTCGCCCTGCTGTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑c < 2:319235/114‑1 (MQ=255)
tgctgTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa < 2:421217/139‑1 (MQ=255)
ctgTTCCCGTAATTGATTGGAATCCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑cc < 2:702929/100‑1 (MQ=255)
ctgTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACg < 1:819437/139‑1 (MQ=255)
ctgTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑cc > 1:702929/1‑100 (MQ=255)
tgTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACgg > 1:65771/1‑139 (MQ=255)
ttCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGtt > 2:626278/1‑139 (MQ=255)
attgGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa < 1:598300/122‑1 (MQ=255)
attgGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa > 2:598300/1‑122 (MQ=255)
attgGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑ccccccagca < 1:779010/93‑6 (MQ=255)
attgGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑ccccccagca > 2:779010/1‑88 (MQ=255)
aCCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCt > 1:532267/1‑139 (MQ=255)
ttctGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑ccccccag > 1:673372/1‑69 (MQ=255)
ttctGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑ccccccag < 2:673372/72‑4 (MQ=255)
tATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa < 2:365337/96‑1 (MQ=255)
tATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa > 1:365337/1‑96 (MQ=255)
ggggAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTAt > 1:837376/4‑139 (MQ=255)
ggTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa < 1:429793/93‑1 (MQ=255)
ggTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa > 2:429793/1‑93 (MQ=255)
aGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCa < 2:68745/139‑1 (MQ=255)
agaaAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa > 2:109453/1‑83 (MQ=255)
agaaAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATa < 1:109453/83‑1 (MQ=255)
gaaAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGt > 1:1054981/1‑86 (MQ=255)
gaaAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGt < 2:1054981/86‑1 (MQ=255)
aaaCAGACTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGa < 2:837376/139‑1 (MQ=255)
aCTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAg > 1:857695/1‑104 (MQ=255)
aCTGCCGGAAATAAGCTGTAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAg < 2:857695/104‑1 (MQ=255)
tAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGaaa > 1:95592/1‑81 (MQ=255)
tAACAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGaaa < 2:95592/81‑1 (MQ=255)
aCAGTGCGAATACCCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACccgccg < 2:532267/139‑1 (MQ=255)
|
TTAAATCCCAGGTTGACGTCAGCTCGCCCTGCTGTTCCCGTAATTGATTGGAAACCACAAAGCTCTTCTGGCTATGGTGAAGGGAAGAAAAAAACAGACTGCCGGAAATAAGCTGTAACAGTGCGAATA‑CCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCG > NC_000913/1972514‑1972768
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
