Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F1 I2 R1
|
757 |
38.1 |
1607544 |
96.5% |
1551279 |
117.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,744,786 |
C→T |
Q444* (CAA→TAA) |
mdtK → |
multidrug efflux system transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,744,786 | 0 | C | T | 100.0%
| 50.9
/ NA
| 17 | Q444* (CAA→TAA) | mdtK | multidrug efflux system transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (12/5); total (12/5) |
CTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAAT > NC_000913/1744665‑1744919
|
cTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGTCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGcc > 1:627571/1‑139 (MQ=255)
cTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGTCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAAc > 1:412034/1‑139 (MQ=255)
tGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGTCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg < 1:769810/139‑1 (MQ=255)
tttATTATTGGTCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTa > 1:81029/1‑139 (MQ=255)
ggtcTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg < 1:225981/86‑1 (MQ=255)
ggtcTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg > 2:225981/4‑89 (MQ=255)
aCGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCAt > 1:566411/1‑79 (MQ=255)
aCGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCAt < 2:566411/79‑1 (MQ=255)
gatgTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg > 2:184428/1‑63 (MQ=255)
gatgTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg < 1:184428/63‑1 (MQ=255)
gTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCtt > 1:689070/1‑139 (MQ=255)
gTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCtt > 1:253478/1‑139 (MQ=255)
cGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTc > 1:336803/1‑139 (MQ=255)
cGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTc > 2:778191/1‑139 (MQ=255)
tATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTg > 1:789316/1‑93 (MQ=255)
tATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTg < 2:789316/93‑1 (MQ=255)
tCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAAt > 2:231053/1‑139 (MQ=255)
|
CTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAAT > NC_000913/1744665‑1744919
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
