Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	773	79.9	4112934	92.2%	3792125	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,371,482	(AT)_4→3	coding (1267‑1268/1680 nt)	ycjM →	alpha amylase catalytic domain family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,371,476	0	A	.	100.0%	318.9 / NA	77	coding (1261/1680 nt)	ycjM	alpha amylase catalytic domain family protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (39/38); total (39/38)
*	NC_000913	1,371,477	0	T	.	100.0%	318.9 / NA	77	coding (1262/1680 nt)	ycjM	alpha amylase catalytic domain family protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (39/38); total (39/38)

TACACGCAGTCCGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGATATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGATAACCCGAGAACTGAACGATGAAG  >  NC_000913/1371343‑1371602

||

tACACGCAGTCCGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatat                                                                                                                           <  1:1899049/139‑1 (MQ=255)

        gTCCGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTa                                                                                                                 >  2:358273/1‑139 (MQ=255)

        gTCCGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTa                                                                                                                 >  1:1173396/1‑139 (MQ=255)

         tCCGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatattcaaa                                                                                                                      <  2:755799/135‑6 (MQ=255)

         tCCGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatattcaaa                                                                                                                      >  1:755799/1‑130 (MQ=255)

          ccGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatat                                                                                                                           >  1:981546/1‑129 (MQ=255)

          ccGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatat                                                                                                                           <  2:981546/129‑1 (MQ=255)

          ccGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTAtt                                                                                                               >  1:1841396/1‑139 (MQ=255)

           cGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTc                                                                                                              >  2:145395/1‑139 (MQ=255)

               tGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               <  2:786504/120‑1 (MQ=255)

               tGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATACTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               >  1:786504/1‑120 (MQ=255)

                 aaataaatGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        <  1:145395/139‑1 (MQ=255)

                 aaataaatGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTGAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        <  1:358273/139‑1 (MQ=255)

                   ataaatGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        >  1:1268129/1‑137 (MQ=255)

                   ataaatGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        <  2:1268129/137‑1 (MQ=255)

                   ataaatGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTcg                                                                                                      >  2:1994032/1‑139 (MQ=255)

                     aaatGTGTCCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               >  1:1345618/1‑114 (MQ=255)

                     aaatGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               <  2:1345618/114‑1 (MQ=255)

                     aaatGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTcgcg                                                                                                    <  1:806031/139‑1 (MQ=255)

                       atGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTa                                                                                                  <  2:1841396/139‑1 (MQ=255)

                       atGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTa                                                                                                  >  2:17424/1‑139 (MQ=255)

                        tgtgACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTaa                                                                                                 <  1:1994032/139‑1 (MQ=255)

                           gACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAAt                                                                                                <  2:387466/137‑1 (MQ=255)

                           gACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAAt                                                                                                >  1:387466/1‑137 (MQ=255)

                                 tatGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatattcaa                                                                                                                       >  2:1561372/1‑106 (MQ=255)

                                 tatGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatattcaa                                                                                                                       <  1:1561372/110‑5 (MQ=255)

                                  atGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTa                                                                                                                 >  2:534012/1‑113 (MQ=255)

                                  atGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTa                                                                                                                 <  1:534012/113‑1 (MQ=255)

                                      aTGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGt                                                                                                   >  1:725109/1‑123 (MQ=255)

                                      aTGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGt                                                                                                   <  2:725109/123‑1 (MQ=255)

                                        gCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatatt                                                                                                                          >  1:592203/1‑99 (MQ=255)

                                        gCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatatt                                                                                                                          <  2:592203/100‑2 (MQ=255)

                                        gCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTc                                                                                 >  1:884019/1‑139 (MQ=255)

                                         cGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        <  2:1044230/115‑1 (MQ=255)

                                         cGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        >  1:1044230/1‑115 (MQ=255)

                                         cGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTa                                                                                                  <  2:1589682/121‑1 (MQ=255)

                                         cGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTa                                                                                                  >  1:1589682/1‑121 (MQ=255)

                                         cGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCg                                                                                >  2:1271018/1‑139 (MQ=255)

                                          gTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTc                                                                                                       <  1:832606/115‑1 (MQ=255)

                                          gTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTc                                                                                                       >  2:832606/1‑115 (MQ=255)

                                           ttAAGCCTCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        >  1:1347109/1‑113 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               <  2:1075020/92‑1 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               >  1:1075020/1‑92 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        <  2:1347109/113‑1 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        <  2:209234/113‑1 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCt                                                                                                        >  1:209234/1‑113 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGt                                                                                                   >  2:748539/1‑118 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGt                                                                                                   <  1:748539/118‑1 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGt                                                                                                   <  1:199667/118‑1 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGt                                                                                                   >  2:199667/1‑118 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGaa                                                                              >  1:731495/1‑139 (MQ=255)

                                           ttAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGaa                                                                              >  1:1249997/1‑139 (MQ=255)

                                                   ccgTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatattcaaag                                                                                                                     >  1:724384/1‑88 (MQ=255)

                                                   ccgTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatattcaaag                                                                                                                     <  2:724384/94‑7 (MQ=255)

                                                    cgTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGa                                                                     <  1:1271018/139‑1 (MQ=255)

                                                                     agaaCGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTaa                                                    <  2:831327/139‑1 (MQ=255)

                                                                           ttGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               <  2:48476/60‑1 (MQ=255)

                                                                           ttGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               >  1:48476/1‑60 (MQ=255)

                                                                            tGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAAt                                                                                                <  1:1863695/88‑1 (MQ=255)

                                                                            tGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAAt                                                                                                >  2:1863695/1‑88 (MQ=255)

                                                                            tGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTaaa                                             >  2:1080923/1‑139 (MQ=255)

                                                                                 cAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAata                                        <  2:731495/139‑1 (MQ=255)

                                                                                    gTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATca                                     <  2:1173396/139‑1 (MQ=255)

                                                                                    gTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATca                                     <  2:884019/139‑1 (MQ=255)

                                                                                             tGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               <  2:48605/42‑1 (MQ=255)

                                                                                             tGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGat                                                                                                                               >  1:48605/1‑42 (MQ=255)

                                                                                             tGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAAc                                                                          <  1:1071968/93‑1 (MQ=255)

                                                                                             tGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAAc                                                                          >  2:1071968/1‑93 (MQ=255)

                                                                                              gCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatattcaaa                                                                                                                      <  1:1971420/50‑6 (MQ=255)

                                                                                              gCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGatatattcaaa                                                                                                                      >  2:1971420/1‑45 (MQ=255)

                                                                                              gCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGt                                                                                                   >  1:2046818/1‑67 (MQ=255)

                                                                                              gCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGt                                                                                                   <  2:2046818/67‑1 (MQ=255)

                                                                                              gCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTa                                                     <  2:803705/113‑1 (MQ=255)

                                                                                              gCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTa                                                     >  1:803705/1‑113 (MQ=255)

                                                                                              gCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAagag                           >  2:1714848/1‑139 (MQ=255)

                                                                                              gCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAagag                           >  1:580892/1‑139 (MQ=255)

                                                                                                ccATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGAt                         <  1:1080923/139‑1 (MQ=255)

                                                                                                ccATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGAt                         <  1:17424/139‑1 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAAc                                                                          <  2:1653303/87‑1 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAAc                                                                          >  1:1653303/1‑87 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGata                                                                   <  1:1054663/94‑1 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGata                                                                   >  2:1054663/1‑94 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTa                                                     <  1:1378169/108‑1 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTa                                                     >  2:1378169/1‑108 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGAt                         <  1:1319576/136‑1 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGAt                         >  2:1319576/1‑136 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGAt                         >  1:605587/1‑136 (MQ=255)

                                                                                                   tGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGAt                         <  2:605587/136‑1 (MQ=255)

                                                                                                    gCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGATAAcc                     >  2:1531637/1‑139 (MQ=255)

                                                                                                     cGATTTTGTTAAGTTTCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGATAAccc                    <  2:580892/139‑1 (MQ=255)

                                                                                                                  tttCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGc                                                                                                         <  1:395371/41‑1 (MQ=255)

                                                                                                                  tttCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGc                                                                                                         >  2:395371/1‑41 (MQ=255)

                                                                                                                  tttCCCCGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGATAACCCGAGAACTGAACGa       >  1:87478/1‑139 (MQ=255)

                                                                                                                     ccccGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGAt                         >  2:939772/1‑118 (MQ=255)

                                                                                                                     ccccGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGCTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGAt                         <  1:939772/118‑1 (MQ=255)

                                                                                                                       ccGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATca                                     <  2:164739/104‑1 (MQ=255)

                                                                                                                       ccGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATca                                     >  1:164739/1‑104 (MQ=255)

                                                                                                                       ccGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGATAACCCGAGAACTGAACGATGAAg  <  1:1770517/139‑1 (MQ=255)

                                                                                                                       ccGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGATAACCCGAGAACTGAACGATGAAg  <  1:1714848/139‑1 (MQ=255)

                                                                                                                       ccGGTGTGCCAGCG‑‑ATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGATAACCCGAGAACTGAACGATGAAg  >  2:514622/1‑139 (MQ=255)

||

TACACGCAGTCCGTATGAAATAAATGTGACCTATATGGATGCGTTAAGCCGCCGTGAGAGTAGCGATGAAGAACGTTGCGCCAGGTTTATCCTTGCCCATGCGATTTTGTTAAGTTTCCCCGGTGTGCCAGCGATATATATTCAAAGTATTCTTGGCTCGCGTAATGATTACGCAGGTGTCGAAAAACTCGGATATAACCGTGCGATTAACCGTAAAAAATATCACAGTAAAGAGATAACCCGAGAACTGAACGATGAAG  >  NC_000913/1371343‑1371602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A