Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	773	79.9	4112934	92.2%	3792125	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,443,244	A→G	K288R (AAG→AGG)	tamA →	translocation and assembly module for autotransporter export, outer membrane subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,443,244	0	A	G	100.0%	306.7 / NA	87	K288R (AAG→AGG)	tamA	translocation and assembly module for autotransporter export, outer membrane subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (37/50); total (37/50)

AATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAAGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTGGAACAATATTATTTGGTGCAGG  >  NC_000913/4443112‑4443375

aaTTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTg                                                                                                                               >  1:2056185/1‑139 (MQ=255)

 aTTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTgg                                                                                                                              <  2:1904364/139‑1 (MQ=255)

      aTAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGaa                                                                                                                         <  1:793913/139‑1 (MQ=255)

       tAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAAc                                                                                                                        <  2:1256639/139‑1 (MQ=255)

       tAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAAc                                                                                                                        >  1:480517/1‑139 (MQ=255)

        aaaGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAAct                                                                                                                       <  2:480517/139‑1 (MQ=255)

        aaaGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAAct                                                                                                                       <  1:827193/139‑1 (MQ=255)

            cgcgcgAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   >  1:1137543/1‑139 (MQ=255)

            cgcgcgAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   >  2:1156448/1‑139 (MQ=255)

              cgcgAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTgg                                                                                                                              <  2:1513484/126‑1 (MQ=255)

              cgcgAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTgg                                                                                                                              >  1:1513484/1‑126 (MQ=255)

                cgaaacgaaaGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGt                                                                                                               <  2:1716647/139‑1 (MQ=255)

                cgaaacgaaaGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGt                                                                                                               <  1:1773553/139‑1 (MQ=255)

                         aGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTg                                                                                                      <  2:492766/139‑1 (MQ=255)

                             ttACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   <  2:1647288/122‑1 (MQ=255)

                             ttACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   >  1:1647288/1‑122 (MQ=255)

                              tACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGaccac                                                                                                 <  2:2056185/139‑1 (MQ=255)

                              tACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGaccac                                                                                                 <  1:860532/139‑1 (MQ=255)

                                   ttGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTg                                                                                                      <  2:351963/129‑1 (MQ=255)

                                   ttGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTg                                                                                                      >  1:351963/1‑129 (MQ=255)

                                    tGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGt                                                                                                               <  2:1629687/119‑1 (MQ=255)

                                    tGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGt                                                                                                               >  1:1629687/1‑119 (MQ=255)

                                     gACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   <  1:171797/114‑1 (MQ=255)

                                     gACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   >  2:171797/1‑114 (MQ=255)

                                          gCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGt                                                                                             >  2:1935387/1‑131 (MQ=255)

                                          gCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGt                                                                                             <  1:1935387/131‑1 (MQ=255)

                                           cGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTAtt                                                                                    >  2:677685/1‑139 (MQ=255)

                                               gTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCcg                                                                                <  2:561139/139‑1 (MQ=255)

                                                        cgAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTcaca                                                                                                           <  2:535208/103‑1 (MQ=255)

                                                        cgAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTcaca                                                                                                           >  1:535208/1‑103 (MQ=255)

                                                        cgAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAAc                                                                       <  2:975205/139‑1 (MQ=255)

                                                         gAACAGAAACCACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   <  1:922479/94‑1 (MQ=255)

                                                         gAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAATGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   >  2:922479/1‑94 (MQ=255)

                                                          aaCAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAg                                                                     >  1:1409695/1‑139 (MQ=255)

                                                                   cacCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGAc                                                            <  2:385292/139‑1 (MQ=255)

                                                                     ccATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACtt                                                          <  2:87218/139‑1 (MQ=255)

                                                                     ccATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACtt                                                          <  1:1156448/139‑1 (MQ=255)

                                                                       aTCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGa                                                                    <  2:599973/127‑1 (MQ=255)

                                                                       aTCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGa                                                                    >  1:599973/1‑127 (MQ=255)

                                                                        tCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATCGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAg                                                       <  2:1758393/139‑1 (MQ=255)

                                                                         cGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGc                                                      >  2:463529/1‑139 (MQ=255)

                                                                         cGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGc                                                      >  1:282987/1‑139 (MQ=255)

                                                                         cGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGc                                                      >  2:671906/1‑139 (MQ=255)

                                                                         cGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACCCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGc                                                      >  1:1955389/1‑139 (MQ=255)

                                                                          gAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGt                                                                                                               >  1:842784/1‑81 (MQ=255)

                                                                          gAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGt                                                                                                               <  2:842784/81‑1 (MQ=255)

                                                                           aaaCCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAAct                                                                                                                       <  1:524605/72‑1 (MQ=255)

                                                                           aaaCCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAAct                                                                                                                       >  2:524605/1‑72 (MQ=255)

                                                                           aaaCCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCta                                                    >  1:608149/1‑139 (MQ=255)

                                                                                  ggTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   >  2:1560867/1‑69 (MQ=255)

                                                                                  ggTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   <  1:1560867/69‑1 (MQ=255)

                                                                                  ggTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTAACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATg                                             >  2:1076337/1‑139 (MQ=255)

                                                                                     cGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCg                                          <  2:1955389/139‑1 (MQ=255)

                                                                                      ggTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAAct                                                                                                                       >  1:1209902/1‑61 (MQ=255)

                                                                                      ggTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAAct                                                                                                                       <  2:1209902/61‑1 (MQ=255)

                                                                                      ggTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGaccac                                                                                                 <  1:1931739/83‑1 (MQ=255)

                                                                                      ggTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGaccac                                                                                                 >  2:1931739/1‑83 (MQ=255)

                                                                                      ggTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGa                                                                    >  2:370596/1‑112 (MQ=255)

                                                                                      ggTTACTCTACGGACGTGGGACCGAGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGa                                                                    <  1:370596/112‑1 (MQ=255)

                                                                                        ttACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCgctg                                       <  2:608149/139‑1 (MQ=255)

                                                                                        ttACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCgctg                                       >  2:609494/1‑139 (MQ=255)

                                                                                         tACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTgg                                                                                                                              >  2:1485662/1‑51 (MQ=255)

                                                                                         tACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTgg                                                                                                                              <  1:1485662/51‑1 (MQ=255)

                                                                                          aCTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCgctgct                                     <  2:551551/139‑1 (MQ=255)

                                                                                          aCTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCgctgct                                     <  1:874087/139‑1 (MQ=255)

                                                                                                cGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTgaagaa                               <  2:1137543/139‑1 (MQ=255)

                                                                                                   aCGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGaa                                                                                                                         >  1:71645/1‑46 (MQ=255)

                                                                                                   aCGTGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGaa                                                                                                                         <  2:71645/46‑1 (MQ=255)

                                                                                                      tGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACGAGt                                                                                             <  1:228440/71‑1 (MQ=255)

                                                                                                      tGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGt                                                                                             >  2:228440/1‑71 (MQ=255)

                                                                                                      tGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATaa                                                 <  2:1831330/115‑1 (MQ=255)

                                                                                                      tGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATaa                                                 >  1:1831330/1‑115 (MQ=255)

                                                                                                      tGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCgctg                                       >  2:527217/1‑125 (MQ=255)

                                                                                                      tGGGACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCgctg                                       <  1:527217/125‑1 (MQ=255)

                                                                                                       gggACCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTg                        >  1:989063/1‑139 (MQ=255)

                                                                                                          aCCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTGGaa                     <  2:989063/139‑1 (MQ=255)

                                                                                                          aCCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTGGaa                     <  2:282987/139‑1 (MQ=255)

                                                                                                          aCCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTGGaa                     <  1:463529/139‑1 (MQ=255)

                                                                                                          aCCGCGCGTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTGGaa                     <  1:57285/139‑1 (MQ=255)

                                                                                                             gcgcgTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   >  1:1230864/1‑42 (MQ=255)

                                                                                                             gcgcgTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   <  2:1230864/42‑1 (MQ=255)

                                                                                                             gcgcgTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTc                                                                                                              <  2:895041/47‑1 (MQ=255)

                                                                                                             gcgcgTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTc                                                                                                              >  1:895041/1‑47 (MQ=255)

                                                                                                               gcgTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   <  1:225916/40‑1 (MQ=255)

                                                                                                               gcgTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTa                                                                                                                   >  2:225916/1‑40 (MQ=255)

                                                                                                               gcgTGAAAGCGACGTGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTGGAACAata                <  1:677685/139‑1 (MQ=255)

                                                                                                                             tGGAAAAGGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTGGAACAATATTATTTGGTGCAgg  <  1:609494/139‑1 (MQ=255)

AATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAAGCCGTGGATGAACTCTTATGGTCACAGTCTGACCACCAGTACTAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTGAAGAATCCACTGGAACAATATTATTTGGTGCAGG  >  NC_000913/4443112‑4443375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A