Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A36 F92 I0 R1	1778	260.6	11261716	96.7%	10890079	148.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,293,757	G→A	100%	D350N (GAC→AAC)	pepN →	aminopeptidase N

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,293,757	0	G	A	97.8%	1081.4 / 5.3	309	D350N (GAC→AAC)	pepN	aminopeptidase N
Reads supporting (aligned to +/- strand): ref base G (7/0); new base A (145/157); total (152/157)
Fisher's exact test for biased strand distribution p-value = 6.49e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 309 total aligned reads displayed.

TCGCCCACGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAGACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGTCCGT  >  NC_002947/2293611‑2293903

  gCCCACGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTc                                                                                                                                               >  2:160706/1‑150 (MQ=255)

  gCCCACGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTc                                                                                                                                               >  1:2682070/1‑150 (MQ=255)

   cccACGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCg                                                                                                                                              <  2:2958951/150‑1 (MQ=255)

    ccACGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGc                                                                                                                                             <  2:30918/150‑1 (MQ=255)

    ccACGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGc                                                                                                                                             <  2:1308683/150‑1 (MQ=255)

      aCGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCt                                                                                                                                           >  2:2719077/1‑150 (MQ=255)

       cGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTa                                                                                                                                          >  2:2439468/1‑150 (MQ=255)

        gAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTAc                                                                                                                                         <  1:2813777/150‑1 (MQ=255)

          gTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCt                                                                                                                                       <  2:1021705/150‑1 (MQ=255)

           tACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTg                                                                                                                                      <  1:1162050/150‑1 (MQ=255)

              ttCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTgcgc                                                                                                                                   >  2:3354128/1‑150 (MQ=255)

                ccACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGcac                                                                                                                                 >  2:344490/1‑150 (MQ=255)

                ccACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGcac                                                                                                                                 >  2:3583034/1‑150 (MQ=255)

                ccACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGcac                                                                                                                                 >  1:3468748/1‑150 (MQ=255)

                 cacaACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGcacc                                                                                                                                >  1:3702669/1‑150 (MQ=255)

                  acaACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGcaccc                                                                                                                               >  2:615828/1‑150 (MQ=255)

                      cgggTCGGGCCACCGCGTCACCGGGCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGGATCGAAAACGTCGCGTACCTGCGctcgcacga                                                                                                                           <  2:4131365/148‑3 (MQ=255)

                      cTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACccacca                                                                                                                           <  2:1973544/150‑1 (MQ=255)

                      cTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACccacca                                                                                                                           <  2:2267437/150‑1 (MQ=255)

                       tGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAg                                                                                                                          >  2:3923275/1‑150 (MQ=255)

                            gggCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGc                                                                                                                     >  2:3543288/1‑150 (MQ=255)

                            gggCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGc                                                                                                                     <  2:2682070/150‑1 (MQ=255)

                                aaCCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAGACGTCGCCTACCTGCGCACCCACCAGTTCGCCGaa                                                                                                                 >  1:4046957/1‑150 (MQ=255)

                                aaCCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGaa                                                                                                                 <  1:4700567/150‑1 (MQ=255)

                                aaCCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGaa                                                                                                                 >  1:4952418/1‑150 (MQ=255)

                                aaCCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGaa                                                                                                                 <  2:593543/150‑1 (MQ=255)

                                    gcgTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGAcg                                                                                                             >  1:5597099/1‑150 (MQ=255)

                                          ccTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGcc                                                                                                       <  2:5454276/150‑1 (MQ=255)

                                           cTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGccc                                                                                                      >  1:677085/1‑150 (MQ=255)

                                              ccGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCAt                                                                                                   <  1:1804751/150‑1 (MQ=255)

                                                gTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATgg                                                                                                 >  1:2889414/1‑150 (MQ=255)

                                                 tttcTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGTTGCCGTGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTAGCCGAAGACGCGGGCCCCATGGc                                                                                                <  2:3275857/147‑1 (MQ=255)

                                                 tGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCACATGGc                                                                                                <  1:142322/150‑1 (MQ=255)

                                                  gACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGcc                                                                                               >  2:2550433/1‑150 (MQ=255)

                                                  gACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGcc                                                                                               >  1:4717980/1‑150 (MQ=255)

                                                     tGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCAc                                                                                            >  1:3016389/1‑150 (MQ=255)

                                                        ttCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCg                                                                                         <  2:3774365/150‑1 (MQ=255)

                                                        ttCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCg                                                                                         >  1:2196297/1‑150 (MQ=255)

                                                          ccAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGt                                                                                       <  1:3855283/150‑1 (MQ=255)

                                                            aGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTgc                                                                                     <  2:5510293/150‑1 (MQ=255)

                                                               tGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGcc                                                                                  >  1:3103982/1‑150 (MQ=255)

                                                                 tCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAGACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCg                                                                                >  2:1258402/1‑150 (MQ=255)

                                                                    cTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGAc                                                                             <  1:3491055/150‑1 (MQ=255)

                                                                     tGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACa                                                                            >  1:1395739/1‑150 (MQ=255)

                                                                     tGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACa                                                                            <  2:4211147/150‑1 (MQ=255)

                                                                            aggCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAGACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCAt                                                                     >  1:4025794/1‑150 (MQ=255)

                                                                             ggCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATc                                                                    <  2:2879069/150‑1 (MQ=255)

                                                                             ggCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATc                                                                    <  1:2691638/150‑1 (MQ=255)

                                                                               cTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGa                                                                  >  1:1699360/1‑150 (MQ=255)

                                                                                ttCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGaa                                                                 >  2:1986851/1‑150 (MQ=255)

                                                                                ttCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGaa                                                                 <  2:5001335/150‑1 (MQ=255)

                                                                                        aTTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCaa                                                         <  2:1456844/150‑1 (MQ=255)

                                                                                          tCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACt                                                       <  2:542444/150‑1 (MQ=255)

                                                                                          tCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACt                                                       <  2:4477940/150‑1 (MQ=255)

                                                                                            cgcgATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTc                                                     <  2:1699360/150‑1 (MQ=255)

                                                                                            cgcgATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTc                                                     >  2:5357232/1‑150 (MQ=255)

                                                                                            cgcgATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTc                                                     <  2:4682200/150‑1 (MQ=255)

                                                                                            cgcgATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTc                                                     <  1:5065536/150‑1 (MQ=255)

                                                                                             gcgATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCt                                                    <  1:3500110/150‑1 (MQ=255)

                                                                                               gATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTac                                                  <  2:4799643/150‑1 (MQ=255)

                                                                                                 tGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTacac                                                <  1:5463106/150‑1 (MQ=255)

                                                                                                 tGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTacac                                                <  2:5324141/150‑1 (MQ=255)

                                                                                                  gCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGAcgc                                                                                                            >  2:1397966/1‑89 (MQ=255)

                                                                                                     gAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTg                                            >  2:2211827/1‑150 (MQ=255)

                                                                                                       gTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGAc                                          <  1:5083936/150‑1 (MQ=255)

                                                                                                        ttCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGAcc                                         <  2:2095850/150‑1 (MQ=255)

                                                                                                           aGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTc                                      <  1:4072469/150‑1 (MQ=255)

                                                                                                            gTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCt                                     >  2:3136524/1‑150 (MQ=255)

                                                                                                             tGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCtc                                    >  2:4743659/1‑149 (MQ=255)

                                                                                                             tGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTa                                    <  2:343643/150‑1 (MQ=255)

                                                                                                             tGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTa                                    >  2:1084421/1‑150 (MQ=255)

                                                                                                              gCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTAc                                   <  2:2145649/150‑1 (MQ=255)

                                                                                                              gCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTAc                                   <  1:2031719/150‑1 (MQ=255)

                                                                                                              gCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTAc                                   >  1:5320018/1‑150 (MQ=255)

                                                                                                                cGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACgc                                 >  1:1317520/1‑149 (MQ=255)

                                                                                                                cGACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACga                                 >  1:4325124/1‑150 (MQ=255)

                                                                                                                 gACATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACgag                                >  2:2386188/1‑150 (MQ=255)

                                                                                                                  aCATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGa                                           >  1:967200/1‑138 (MQ=255)

                                                                                                                  aCATGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACgaga                               <  1:5215351/150‑1 (MQ=255)

                                                                                                                    aTGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAg                             >  2:5378313/1‑150 (MQ=255)

                                                                                                                    aTGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAg                             >  2:5123352/1‑150 (MQ=255)

                                                                                                                    aTGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAg                             >  2:4424640/1‑150 (MQ=255)

                                                                                                                     tGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAgg                            >  2:838501/1‑150 (MQ=255)

                                                                                                                     tGAACTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAgg                            <  2:4324867/150‑1 (MQ=255)

                                                                                                                         cTCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGgcgc                        <  2:691482/150‑1 (MQ=255)

                                                                                                                          tCGCGCACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGcc                       <  1:3947672/150‑1 (MQ=255)

                                                                                                                              gcACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAg                   <  1:1596253/150‑1 (MQ=255)

                                                                                                                              gcACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAg                   >  1:2358532/1‑150 (MQ=255)

                                                                                                                               cACGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGACgt                  >  1:5148885/1‑150 (MQ=255)

                                                                                                                                aCGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAgtg                 <  2:4064013/150‑1 (MQ=255)

                                                                                                                                aCGGTCAAGCGCATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAgtg                 <  1:2124672/150‑1 (MQ=255)

                                                                                                                                        gcgcATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCAt         <  1:5403983/150‑1 (MQ=255)

                                                                                                                                        gcgcATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCAGCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCAt         >  1:4860217/1‑150 (MQ=255)

                                                                                                                                           cATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGt      >  1:3359068/1‑150 (MQ=255)

                                                                                                                                           cATCGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGt      >  1:2530166/1‑150 (MQ=255)

                                                                                                                                              cGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGTCCg   <  1:637342/150‑1 (MQ=255)

                                                                                                                                              cGAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGTCCg   <  1:3583023/150‑1 (MQ=255)

                                                                                                                                               gAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGTCCGt  >  1:189627/1‑150 (MQ=255)

                                                                                                                                               gAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGTCCGt  >  1:5023866/1‑150 (MQ=255)

                                                                                                                                               gAAAACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGTCCGt  >  2:1779339/1‑150 (MQ=255)

TCGCCCACGAGTACTTCCACAACTGGTCGGGCAACCGCGTCACCTGCCGTGACTGGTTCCAGCTGTCGCTGAAGGAAGGCTTCACGGTATTCCGCGATGCCGAGTTCAGTGCCGACATGAACTCGCGCACGGTCAAGCGCATCGAAGACGTCGCCTACCTGCGCACCCACCAGTTCGCCGAAGACGCGGGCCCCATGGCCCACCCGGTGCGCCCGGACAGCTTCATCGAAATCTCCAACTTCTACACCCTGACCGTCTACGAGAAGGGCGCCGAAGTGGTGCGCATGGTCCGT  >  NC_002947/2293611‑2293903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A