Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A36 F1 I1 R1 20 305.6 14112546 93.7% 13223455 143.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947 3,385,634 C→T A105V (GCT→GTT)  tnpT‑I → cointegrate resolution protein T

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,385,6340CT99.6% 983.3 / NA 281A105V (GCT→GTT) tnpT‑Icointegrate resolution protein T
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (133/147);  total (133/148)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 281 total aligned reads displayed.

GCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGGCGCAGGCT  >  NC_002947/3385487‑3385779
                                                                                                                                                   |                                                                                                                                                 
gCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTc                                                                                                                                                 <  2:3036230/150‑1 (MQ=255)
gCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTc                                                                                                                                                 <  1:2693482/150‑1 (MQ=255)
   gAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGc                                                                                                                                              <  1:4988575/150‑1 (MQ=255)
   gAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGc                                                                                                                                              >  1:4300010/1‑150 (MQ=255)
    aaaTACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCATGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCt                                                                                                                                             <  1:4071662/150‑1 (MQ=255)
           gccgcGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGaa                                                                                                                                      <  2:1155874/150‑1 (MQ=255)
            ccgcGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGaaa                                                                                                                                     <  1:1153155/150‑1 (MQ=255)
            ccgcGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGaaa                                                                                                                                     <  1:5856278/150‑1 (MQ=255)
                gATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGTCAGATCAGCTAGAGTAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCCAGCCGaacttgg                                                                                                                                 <  1:389861/150‑6 (MQ=255)
                    ccGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATc                                                                                                                             <  1:4145219/150‑1 (MQ=255)
                      gCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCca                                                                                                                           <  1:6156401/150‑1 (MQ=255)
                         cAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCcagca                                                                                                                        <  1:6384025/150‑1 (MQ=255)
                            cGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGtt                                                                                                                     <  2:26528/150‑1 (MQ=255)
                             tgccAGTTGGCCGACCAGGTTGGCCAACTGTCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTg                                                                                                                    >  1:3090608/4‑150 (MQ=255)
                              aaCAGGTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACACCGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCCGCAGTTgg                                                                                                                   <  1:1291258/150‑1 (MQ=255)
                               acacTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAACTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGa                                                                                                                  <  2:4366210/150‑1 (MQ=255)
                                 aGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACACGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGtt                                                                                                                     >  1:32700/1‑145 (MQ=255)
                                  gTTGGCCGACCAGGTTGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAg                                                                                                               >  2:2402542/1‑150 (MQ=255)
                                   ttGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGt                                                                                                              >  1:6710342/1‑150 (MQ=255)
                                     ggCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACACCGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCa                                                                                                            <  1:1343443/150‑1 (MQ=255)
                                       ccAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCaga                                                                                                          <  1:5888311/150‑1 (MQ=255)
                                       ccAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCaga                                                                                                          <  2:3296682/150‑1 (MQ=255)
                                        cAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCagag                                                                                                         <  2:4136204/150‑1 (MQ=255)
                                         gaCCAGGTTGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGagc                                                                                                        >  1:3406489/2‑150 (MQ=255)
                                         aaCCTGGACGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCcagca                                                                                                                        <  1:4562727/134‑1 (MQ=255)
                                           ccTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCag                                                                                                           >  1:2114463/1‑145 (MQ=255)
                                           ccTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCag                                                                                                           <  2:2114463/145‑1 (MQ=255)
                                                tCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGc                                                                                                 <  2:2236858/150‑1 (MQ=255)
                                                  ggCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTc                                                                                               <  2:3452169/150‑1 (MQ=255)
                                                   gCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCa                                                                                              >  2:972893/1‑150 (MQ=255)
                                                    ccAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCAc                                                                                             <  1:5201150/150‑1 (MQ=255)
                                                    ccAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCAc                                                                                             >  2:2268994/1‑150 (MQ=255)
                                                     cAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACg                                                                                            >  1:5028690/1‑150 (MQ=255)
                                                      aaCTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACgg                                                                                           >  2:1397427/1‑150 (MQ=255)
                                                             aGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCt                                                                                    >  1:6425514/1‑150 (MQ=255)
                                                                        aggaggATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTc                                                                         <  2:5554469/150‑1 (MQ=255)
                                                                        aggaggATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTc                                                                         <  2:4595930/150‑1 (MQ=255)
                                                                         ggaggaTGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCa                                                                        <  2:5260260/150‑1 (MQ=255)
                                                                         ggaggaTGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCa                                                                        <  1:1630137/150‑1 (MQ=255)
                                                                          gaggaTGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTACAGGCTGTTCAg                                                                       >  2:1917627/1‑150 (MQ=255)
                                                                            ggaTGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCa                                                                     >  2:643500/1‑150 (MQ=255)
                                                                             gaTGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCACGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCCTGAAGCTGTTccgtga                                                                    <  2:4054677/150‑6 (MQ=255)
                                                                               tGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTc                                                                                               >  1:932422/1‑121 (MQ=255)
                                                                               tGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAgc                                                                  <  2:4535304/150‑1 (MQ=255)
                                                                                tcctgggCCACGGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAgcg                                                                 >  2:2443222/6‑150 (MQ=255)
                                                                                  gcAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGaaa                                                                                                                                     <  2:5522018/80‑1 (MQ=255)
                                                                                  gcAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCt                                                               >  1:6200061/1‑150 (MQ=255)
                                                                                    aGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAc                                                             >  2:3100416/1‑150 (MQ=255)
                                                                                        cACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTTGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAcagca                                                         >  2:2811834/1‑150 (MQ=255)
                                                                                        cACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAcagca                                                         <  1:6758299/150‑1 (MQ=255)
                                                                                        cACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAcagca                                                         <  2:5935986/150‑1 (MQ=255)
                                                                                         aCCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTAcagcag                                                        >  2:1234876/1‑150 (MQ=255)
                                                                                                 ccAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagca                                                <  1:6076496/150‑1 (MQ=255)
                                                                                                 ccAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAcagca                                                <  2:6779849/150‑1 (MQ=255)
                                                                                                     gAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCaa                                            <  1:4605526/150‑1 (MQ=255)
                                                                                                      aGCGCGAACAACTACACCGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTGGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAAc                                           <  1:378218/150‑1 (MQ=255)
                                                                                                        cgcgAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGc                                         <  2:3506584/150‑1 (MQ=255)
                                                                                                           gAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGc                                         >  1:182202/1‑147 (MQ=255)
                                                                                                              caacTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAg                                   >  2:6369328/1‑150 (MQ=255)
                                                                                                               aacTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGa                                  >  2:3695833/1‑150 (MQ=255)
                                                                                                               aacTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGa                                  >  1:805570/1‑150 (MQ=255)
                                                                                                               aacTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGa                                  >  2:156786/1‑150 (MQ=255)
                                                                                                                acTACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGAc                                 >  2:5705025/1‑150 (MQ=255)
                                                                                                                  tACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCaa                                                                    >  2:1616537/1‑113 (MQ=255)
                                                                                                                  tACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCaa                                                                    <  1:1616537/113‑1 (MQ=255)
                                                                                                                  tACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCg                               >  1:5513125/1‑150 (MQ=255)
                                                                                                                  tACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCg                               >  1:1090288/1‑150 (MQ=255)
                                                                                                                  tACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCg                               >  2:2989152/1‑150 (MQ=255)
                                                                                                                  tACAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCg                               >  2:6054817/1‑150 (MQ=255)
                                                                                                                    cAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAg                             <  1:2433951/150‑1 (MQ=255)
                                                                                                                    cAACGCGAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAg                             <  2:4286703/150‑1 (MQ=255)
                                                                                                                       cgcgAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGtt                          <  1:6026507/150‑1 (MQ=255)
                                                                                                                         cgAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTga                        <  2:3207103/150‑1 (MQ=255)
                                                                                                                          gAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGGATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAg                             <  1:1238965/144‑1 (MQ=255)
                                                                                                                          gAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTgag                       >  1:4504615/1‑150 (MQ=255)
                                                                                                                          gAACGGCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTga                        >  2:217795/1‑149 (MQ=255)
                                                                                                                              ggCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATg                   >  2:4114892/1‑150 (MQ=255)
                                                                                                                              ggCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATg                   >  2:6172976/1‑150 (MQ=255)
                                                                                                                              ggCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATg                   >  1:775423/1‑150 (MQ=255)
                                                                                                                              ggCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATg                   >  1:1703533/1‑150 (MQ=255)
                                                                                                                              ggCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATg                   >  2:5873413/1‑150 (MQ=255)
                                                                                                                              ggCTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATg                   >  2:4584839/1‑150 (MQ=255)
                                                                                                                                cTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGcc                 >  2:728343/1‑150 (MQ=255)
                                                                                                                                cTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGcc                 >  1:4473823/1‑150 (MQ=255)
                                                                                                                                cTCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGcc                 <  1:6241654/150‑1 (MQ=255)
                                                                                                                                 tCGATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGccc                >  1:2991960/1‑150 (MQ=255)
                                                                                                                                   gATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGc              >  1:552783/1‑150 (MQ=255)
                                                                                                                                   gATTACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCCTGAAGCTGTTccgt                                                                      <  1:3576033/94‑4 (MQ=255)
                                                                                                                                      tACCAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACGGACCGAGGTTGAGAATGCCCGCTTg           <  1:5275053/150‑1 (MQ=255)
                                                                                                                                        ccAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGgc         <  2:4971996/150‑1 (MQ=255)
                                                                                                                                        ccAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGgc         >  1:2828767/1‑150 (MQ=255)
                                                                                                                                        ccAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGgc         >  2:4237884/1‑150 (MQ=255)
                                                                                                                                        ccAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGgc         >  2:1873142/1‑150 (MQ=255)
                                                                                                                                         cAGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAAca                                                   >  1:3214508/1‑107 (MQ=255)
                                                                                                                                          aGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGgcgc       <  2:854048/150‑1 (MQ=255)
                                                                                                                                          aGAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGgcgc       <  2:2494714/150‑1 (MQ=255)
                                                                                                                                           gAACCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGGCGCa      <  2:1762566/150‑1 (MQ=255)
                                                                                                                                             aCCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCaa                                      >  1:4858261/1‑116 (MQ=255)
                                                                                                                                             aCCAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCaa                                      <  2:4858261/116‑1 (MQ=255)
                                                                                                                                              ccAAGTTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGGCGCAGGc   >  1:2479562/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
GCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGCTCACGGAACAGCTTCAGGCTGTTCAGCAAGCGCTACAGCAGGAACAGCAGCAACGCCAACAGACCGAGGTTGAGAATGCCCGCTTGGCGCAGGCT  >  NC_002947/3385487‑3385779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A