Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F17 I0 R1 46 108.0 2318666 92.3% 2140128 226.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,606,902 A→G 14.9% S267P (TCC→CCC)  rsmC ← 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,606,9020AG14.9% 211.9 / 2.1 87S267P (TCC→CCC) rsmC16S rRNA m(2)G1207 methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (23/46);  new base G (13/2);  total (39/48)
Fisher's exact test for biased strand distribution p-value = 2.62e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTAACGTCGAG  >  NC_000913/4606665‑4607134
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                         
aTAATGACCCTTTCTTCTCCTGGCGGTTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTGGCGCGATCGC‑TTCGTGGAAGCCAAATGTTTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTCCAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCTCCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag                                                                                                                                                                                                                                          <  2:1114981/239‑1 (MQ=255)
 tagtgatccTTTCTGCGACTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGAGCAC‑TTCGTGGAAGCCAAGTGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCTCCGCATCCATGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag                                                                                                                                                                                                                                          <  2:622787/231‑1 (MQ=255)
 tAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTTGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGga                                                                                                                                                                                                                                           <  1:294478/237‑1 (MQ=255)
     tatccgttcgccGCCTGGAGGGGAATAATTGCGGTATAACCCTAGAATTGCCCTGTTGTCGCTATCAC‑TTCGTGGAACCCAAATGTCTCATCCAGCACGTCCGGAGAAGGCGGGAAAGCGTTCGCTCCAATACGCAGCGCGCAGCCGCTATTAAGATGACTCCCCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAgatgat                                                                                                                                                                                                                                     <  2:735195/228‑1 (MQ=255)
           ttcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCCTCCAGGCTGGTTTGCATCCCAACGTGGAACGTCGGGTGTGGGATGATCATA‑Tc                                                                                                                                                                                                                              >  2:930189/1‑239 (MQ=255)
            tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATA‑TCa                                                                                                                                                                                                                             >  1:1100329/1‑239 (MQ=255)
            tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGTGATGTTTCTA‑TCa                                                                                                                                                                                                                             >  1:968187/1‑239 (MQ=255)
            tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGCTGGGGGGGATCATA‑Tcc                                                                                                                                                                                                                             >  2:222614/1‑238 (MQ=255)
            tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCCGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCa                                                                                                                                                                                                                             >  1:373339/1‑239 (MQ=255)
                cGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAAc                                                                                                                                                                                                                         <  1:843876/239‑1 (MQ=255)
                   cTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGGTGTTCATA‑TCACAACGa                                                                                                                                                                                                                       >  2:535522/1‑238 (MQ=255)
                   cTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGAGGAACAAA‑TCAAAAAGa                                                                                                                                                                                                                       >  1:912457/1‑238 (MQ=255)
                                aTGGCGCGATCCACCTTGACGCGCCCTGTTTGCGGGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTCCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGa                                                                                                                                                                                                         <  2:463768/239‑1 (MQ=255)
                                 tGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGaa                                                                                                                                                                                                        <  2:830474/239‑1 (MQ=255)
                                    cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGGTCATA‑TCAAAACGACCTTTTACCTCGGAAAAg                                                                                                                                                                                                     >  1:911006/1‑239 (MQ=255)
                                    cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAg                                                                                                                                                                                                     >  1:561444/1‑239 (MQ=255)
                                       gATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGGTCATG‑TTAAAACCACCTTTCACATCGGAAAAGACg                                                                                                                                                                                                  >  2:877471/1‑239 (MQ=255)
                                         tACACCTGGAAGCGCCCTGTTTGGGCCATCCC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGt                                                                                                                                                                                                 <  2:271245/238‑1 (MQ=255)
                                          acacCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCACCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTg                                                                                                                                                                                               <  2:151689/239‑1 (MQ=255)
                                          acacCGTGAAGCCCCCTGTTTGCGCGATCAC‑TTCGTGTAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTg                                                                                                                                                                                               <  2:246660/239‑1 (MQ=255)
                                               gtGAATCGCCCCGTATGAGCGA‑CACATTCGGTGGAGCAAAATGTCTCTTCAAGCGCTGCCGGATAAGGCAGGAAGGCGTTCGTTACAATTCGCAGTCCGCCGCCGCTATTAAGATGACGCTCCGCACCGCGAATCAGCGTTTGCGCTGCATCCAGGCTGGGTTGCATCCCACCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGAGCTTTCGCCTCGGAAAAGACGTTGCTggt                                                                                                                                                                                          <  2:219536/238‑2 (MQ=255)
                                                 gAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCCTCCCATCGTGGACCGGCGGGTTGGGGCTGAGCACA‑TCAAAAAGCCCCTTCACCTCGGAAAAGACGTTGCCGGcca                                                                                                                                                                                        >  2:1027560/1‑237 (MQ=255)
                                                   aGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGTGGGTTGGGGATGATCATT‑TCAAAACGAACTTTCACCCCCGGAAAGAAGTTGCTgggcaa                                                                                                                                                                                       >  2:265097/1‑234 (MQ=255)
                                                      gcCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACt                                                                                                                                                                                   <  1:205244/239‑1 (MQ=255)
                                                      gcCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCGCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACt                                                                                                                                                                                   <  1:880895/239‑1 (MQ=255)
                                                       cccTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCCCGGAAAAGACGTTGCTGGCAAAGACt                                                                                                                                                                                   >  1:1130001/1‑238 (MQ=255)
                                                       cccTGTTTGCGAGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGAACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTAGCAAGGATACAA‑TCAAAACGACCTTTGACCTCGGACAAGAGGCTGCGTGCAAAGaac                                                                                                                                                                                   >  2:848742/1‑236 (MQ=255)
                                                        ccTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTTGAGATGATCATA‑TCAAAAACACCCTTCACCTCGGAAAAAACGTTGCCGGGCAAGACttt                                                                                                                                                                                 >  1:157020/1‑238 (MQ=255)
                                                        ccTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCACA‑TCAAAAAGACCTTTCACCTCGGAAAAGACGTTGCCTGCAAAGACtt                                                                                                                                                                                  >  2:722396/1‑238 (MQ=255)
                                                        ccTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGATGCACAAATTCAAAACAACCTTCCACTCCGGAAAAG‑CGGTGCTTGCaaaacctt                                                                                                                                                                                  >  2:447644/1‑233 (MQ=255)
                                                                    aTCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAAACGTTGCTGGCAAAGACTTCACCTTCAacac                                                                                                                                                                      >  1:981133/1‑238 (MQ=255)
                                                                    aTCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGGTCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGGTGCTGGCAAAGAATTCACCTTCAacac                                                                                                                                                                      >  1:408979/1‑238 (MQ=255)
                                                                    aTCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTg                                                                                                                                                                                               <  2:908416/213‑1 (MQ=255)
                                                                    aTCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTg                                                                                                                                                                                               >  1:908416/1‑213 (MQ=255)
                                                                     tCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCg                                                                                                                                                                    <  2:561444/239‑1 (MQ=255)
                                                                       aC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGtt                                                                                                                                                                  <  2:531520/239‑1 (MQ=255)
                                                                                  aGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGTCCGCAAgg                                                                                                                                                        >  1:882784/1‑238 (MQ=255)
                                                                                    ccAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAGCATA‑TCAAAACGGCCCTTCACCTCGGGAAAGACGTTGCTGGCAAAGACTTCACCTTCACAACCGTTGGCCGcgcgggt                                                                                                                                                      >  2:272279/1‑233 (MQ=255)
                                                                                      aaaTGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTg                                                                                                                                                    <  1:600484/239‑1 (MQ=255)
                                                                                            cttaTCCCGCCCGTCCAGATAAGGCGGGAGGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCGCCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGAAAAGACTTCACGTTCAACACCGTTGGCCGCAAGTGTTGCGCgg                                                                                                                                               <  2:375563/235‑1 (MQ=255)
                                                                                            ctcATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCgg                                                                                                                                               <  1:926632/238‑1 (MQ=255)
                                                                                            ctcATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCgg                                                                                                                                               <  1:528201/238‑1 (MQ=255)
                                                                                             tcATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGGTGATCATA‑TCAAAACGACCCTTCACCTCGGGAAAAACGTTGCTGGCAAAGAATTTACCTTCAACCCCGTTGGACGCCAGTGTTGcgcg                                                                                                                                                >  2:528201/1‑236 (MQ=255)
                                                                                                         tCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccg                                                                                                                                  >  1:126256/1‑238 (MQ=255)
                                                                                                         tCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGATGGACATA‑TCAAAACGACCTTTCACCCCGGGAAAAACCGTGCTGGGCAAGAATTTACCCTCCAAACCCTTTGCCGCCAGGGGTGCGCGGGTGGGtttccacc                                                                                                                                  >  2:617898/1‑232 (MQ=255)
                                                                                                          ccggcgaaGGCAGGAAGGCGTTCGCTACAATCCGCAGCTCGCCGCCGCGATTAAGATGACCCACCGCACCGCGAATCAGCGTTGGCGCGGCATCCAGGCTGGTTTGCATCCCATCGTGGAGCGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgc                                                                                                                                 <  2:598645/232‑1 (MQ=255)
                                                                                                          ccGGAGAAGGCGGGAAGGCGTTCGCAACAATTCGCAGCTCGCCGCCGCTATTAAGAGGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgc                                                                                                                                 <  2:373339/238‑1 (MQ=255)
                                                                                                                 aGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCag                                                                                                                         <  1:265097/239‑1 (MQ=255)
                                                                                                                  ggCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATA‑TCAAAACCACCTTTCACCTCGGAAAAAACGGTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTTCGCCGCTGGCTTCTACCGCCGGGGCaga                                                                                                                        >  1:885930/1‑239 (MQ=255)
                                                                                                                     aGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTGTGAGGTGATCATA‑TAAAAACAACCCTTCCCCTCGGGAAAAACGCTGGTGGCAAAGACTTCACCTTTCACACCGCTGGCCGCAACGGCTGCGCGGCTGGCTTCTACCGCCgggggcgggaa                                                                                                                     >  2:99222/1‑232 (MQ=255)
                                                                                                                        aaGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGAc                                                                                                                     <  1:447644/236‑1 (MQ=255)
                                                                                                                        aaGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACAt                                                                                                                   <  1:222614/238‑1 (MQ=255)
                                                                                                                            cGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGGTGCTGGCCAAGACTTCACCCTCAACACCGTTGGCCCCAAGAGTTGCGCGGCGGGGTTCCACCCCCCGGGACGAGACaccccc                                                                                                               >  2:1061308/1‑233 (MQ=255)
                                                                                                                              ttCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTTGCGGTGACTATA‑TTAAGACGGCCTTTCACCTCGGAAAATGCGGTTCCTGCTAAGACTTCGCCGTCACAACCGTTGGCCCCGAGGGTGGCGCGGCTGGCGTCTTCAGCCGCGGCGGTGTCATAGcacac                                                                                                            >  2:736683/1‑238 (MQ=255)
                                                                                                                                 gCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACCAGGt                                                                                                         >  1:73218/1‑239 (MQ=255)
                                                                                                                                 gCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGt                                                                                                         <  2:126256/239‑1 (MQ=255)
                                                                                                                                             aGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGGGAGACGAAtttt                                                                                             >  1:920965/1‑239 (MQ=255)
                                                                                                                                                    cgccgcTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGa                                                                                       <  1:617898/238‑1 (MQ=255)
                                                                                                                                                       cgcTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATg                                                                                    <  1:272279/238‑1 (MQ=255)
                                                                                                                                                            ttAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGgcgcgc                                                                              <  1:42235/239‑1 (MQ=255)
                                                                                                                                                             tAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCa                                                                             <  2:627544/239‑1 (MQ=255)
                                                                                                                                                              aaGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCaa                                                                            <  1:268103/239‑1 (MQ=255)
                                                                                                                                                                    aCGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCCCGGAAAAGACGTTGCTGGCCAAGACTTCACCTTCAACACCCTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCCCCGGGGCAGAGACATCCCACAAGGTGAGACGACTTTTCGGCGAATGGCGCGCAAAGGCaa                                                                      >  1:1008821/1‑239 (MQ=255)
                                                                                                                                                                    aCGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAAACTTCACCTTCAACACCGTTGGGCGCCAGTGTTGCGCGGCTGGCTTCTACCCCCCGGGGAGAGACATCGCACAAGGGGAGACGAATTTTCGGCGAATGGCGCCCCAAGGCa                                                                       >  2:1123100/1‑238 (MQ=255)
                                                                                                                                                                    aCGCACCCCACCGCGAAGCAGCGTTTGCGCCGCGTCCAGGCTGGTTAGACTCCCAGCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTGTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGc                                                                        <  2:744040/237‑1 (MQ=255)
                                                                                                                                                                     cgcaccgcacCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATgg                                                                                   <  1:331128/225‑1 (MQ=255)
                                                                                                                                                                      gcacctcaccGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACt                                                                    <  1:848742/239‑1 (MQ=255)
                                                                                                                                                                           gcaccgcGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTTACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACAACGTTGGCCGCAAGTGGTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGaaa                                                                >  1:18553/1‑238 (MQ=255)
                                                                                                                                                                           gcaccgcGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAg                                                               <  1:877471/239‑1 (MQ=255)
                                                                                                                                                                                         cGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGGGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCcac                                                 >  1:733325/1‑239 (MQ=255)
                                                                                                                                                                                          gTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCcac                                                 <  1:1123100/238‑1 (MQ=255)
                                                                                                                                                                                             tGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCGCCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGcc                                             <  1:78657/239‑1 (MQ=255)
                                                                                                                                                                                              gcgcCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGAGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCg                                            <  1:77902/239‑1 (MQ=255)
                                                                                                                                                                                               cgccgcACCCGGGCTGGTTTGCATCCGATCGTGGAACGGGGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGAAAGTGTTGCGCGGCTGGCTTCTCCCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTGTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCg                                            <  2:1130001/238‑1 (MQ=255)
                                                                                                                                                                                                   gcATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCCCCTTCAACACGGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATc                                       <  2:337382/239‑1 (MQ=255)
                                                                                                                                                                                                   gcATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATc                                       <  1:109653/239‑1 (MQ=255)
                                                                                                                                                                                                    gatacAGGCTGGTTTGCCACCCATCGGCGAACGGCGGGTTGGGGATGATCATA‑TCAAAACGTCCTTTGACCCCGGCAAAGACGTTGCTGGCAAAGACTTCTCCTTCAACACGGTTGGCCGCAAGTGTGGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCTAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATcc                                      <  2:226532/235‑1 (MQ=255)
                                                                                                                                                                                                     aTCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATcc                                      <  1:99222/238‑1 (MQ=255)
                                                                                                                                                                                                      tCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATc                                       <  1:957430/236‑1 (MQ=255)
                                                                                                                                                                                                       ccAGGGTGGTTGGCAGCCCATCGTGGAAGGGCGGGTTGGAGATGATCATA‑TCAAAACGCCCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGATTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGc                                   <  2:280717/239‑1 (MQ=255)
                                                                                                                                                                                                            cTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCAc                                 <  1:1061308/236‑1 (MQ=255)
                                                                                                                                                                                                            cTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACtt                               <  1:107512/238‑1 (MQ=255)
                                                                                                                                                                                                            cTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACtt                               <  1:722396/238‑1 (MQ=255)
                                                                                                                                                                                                               gTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAAAGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGAGTTGCGCGGCTGGGTTCTACCGCCGGGGCAGAGACATCGCCCAAGGGGAGACGCATTTTCGGCGAATAGCGCGCAAAGGCCACTGACAACACGCCCGCGCCACAGCCGCCAACCAGCACTTTa                             >  2:520142/1‑237 (MQ=255)
                                                                                                                                                                                                                tttGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGGGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCt                          >  1:579557/1‑239 (MQ=255)
                                                                                                                                                                                                                        tcATCGTGGAACGGCGCGGTGGGGATGATCATA‑ACAAAACGACCTTTCACCTCGGAAAAGATGTTGCTGGCAAAGACTTCACCTTCACCGCCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCAGGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGtgtg                  <  2:1100329/238‑1 (MQ=255)
                                                                                                                                                                                                                        ccATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGtgtg                  <  1:930189/239‑1 (MQ=255)
                                                                                                                                                                                                                        ccAGCGTGGAACGGCGGGTTGGAGATGATAATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGtgtg                  <  2:981133/239‑1 (MQ=255)
                                                                                                                                                                                                                                      cggGTTGGAGGTGAACATA‑TCAAAACGACCTTTCACCCCGGAAAAAACGTTTCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGGTGCGCGGCAGGCTTCTACCGCCGGGGCAGAGACATCGCACCAAGGGAGACGAATTTTCGGCGAATTGCGCGCAACAGCCACTGCAAGCACGACCGCCCCACACACGACACCCAGCACTTTACACTTCGTGTGCGGAggtcaccccg    >  2:412072/1‑230 (MQ=255)
                                                                                                                                                                                                                                        ggTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTAACGTCgag  >  1:265265/1‑239 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                         
ATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAC‑TTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑TCAAAACGACCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTAACGTCGAG  >  NC_000913/4606665‑4607134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A