Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F27 I0 R1
|
185 |
118.8 |
2757226 |
85.6% |
2360185 |
223.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,606,902 |
A→G |
20.2% |
S267P (TCC→CCC) |
rsmC ← |
16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,606,902 | 0 | A | G | 20.2%
| 152.5
/ 6.9
| 72 | S267P (TCC→CCC) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (9/46); new base G (14/2); total (23/49) |
| Fisher's exact test for biased strand distribution p-value = 2.95e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTT > NC_000913/4606664‑4607125
|
gaTAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGAAACGGCGGGGTGga > 1:1098056/1‑239 (MQ=255)
aTAATTAACCTTCCTTCCCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAACTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag < 1:497418/239‑1 (MQ=255)
ttaTTAACCTTTCTTCGCCTGGCGGGTTATAGTGGCGCGATTCCCCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCA‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag < 1:1307763/236‑1 (MQ=255)
tAATTAACCTTTCTTCGCCTGGCGGGTCAAAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag < 1:408062/238‑1 (MQ=255)
tAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATTCACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAgatgat < 1:1170134/239‑1 (MQ=255)
ccTTTCCTCGCCTGGCGGGTCATAATGGCGCGATACTCCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCat < 1:195215/239‑1 (MQ=255)
tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGaatgagccaataa > 1:1299561/1‑231 (MQ=255)
tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGGTGATCagattc > 1:192243/1‑237 (MQ=255)
tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGGTGGGCATATCa > 1:768758/1‑239 (MQ=255)
tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGGGGATcctgata > 1:821358/1‑233 (MQ=255)
tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCACCGTGGAACGGGGGGTTGGGGATGTGCATATcc > 1:804831/1‑238 (MQ=255)
tcGCCTTGGGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTTTTTGCCGGATCCCTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCaaaa < 1:334343/239‑1 (MQ=255)
gcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCGGTTTGCGCGATCACTTCGTGGAAGCA‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCACCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCaaaa < 1:852616/238‑1 (MQ=255)
ggCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCACCGTTTGCGCCGCATCCAGGCTGGTTTCCATCCCATCGTGGAACGGCGGGTTGGGGAGGTTCTTTTCAAAACgcc > 1:263536/1‑235 (MQ=255)
aTAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGAGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑c < 1:438609/239‑1 (MQ=255)
aTGGCGCGATACACCTTGAAGCCGCCGGGTTGCGCGATCACTTCGTGGAAGCC‑AAATGTTTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGa < 1:196069/239‑1 (MQ=255)
cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGCCGGGTTGTGGAGGCACATATTAAAACA‑ACCTTTCACCT‑CCGaaaaa > 1:357124/1‑238 (MQ=255)
cggattccccTTTAAGCGCCCTGGTTGGGCGCTCCCTTGGGGGAAGCC‑AAATGGCCCATCCAACCCGTCCGGATAAGGCAGGAAGGCGTTCGCTAAAATTCGCGG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAg < 2:41070/230‑1 (MQ=255)
cgATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTTACCT‑CGGAAAAAAc > 1:41070/1‑239 (MQ=255)
cccccTTGAAGCGCCCTGTTTGGGCGATCCATTGGGGGAATCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑g < 2:787645/236‑1 (MQ=255)
cTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGATGGTCATATACAAACG‑GCCTTTACCCC‑CGGAAAAAAGATT‑GCTgg > 1:384722/1‑239 (MQ=255)
tgcaGCCCCCTTTTTGTCTGATCCCTTC‑TGGGAGCCAAAATGCCTCCCCCACCCCGCCCGGAGAAGGCAGGAAGGCCTTCGCTACAATTCGCCG‑CTCGCCGCCGCTATTAAGATGTCGCACCGCACCTCGAATCAGCGTTTGCGCCGCATCCATGCTGGTTTGCATCCCATCGTGGAACGGCAGGGTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCa < 2:199736/236‑1 (MQ=255)
tGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGGTGATCATATCTAAACG‑CCCCTTCCACT‑CGGGAAAAACGGT‑TCTGGCa > 1:663098/1‑239 (MQ=255)
caGCGCCCTTTTTGCGCGATCCCTTCGGGAAAGCC‑AAATGTCTCTCCCAGCCCGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCaaa < 2:804831/238‑1 (MQ=255)
aaGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGGCGGGCATATCAAAACG‑CCCCTTTCCCC‑CGGAAAAAACGTTCGCTGGCaa > 1:1198853/1‑239 (MQ=255)
aGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATATCAAAAAC‑ACCTTTCACCT‑CGGAAAAAACGTT‑GCTGGCCAAg > 1:1119051/1‑239 (MQ=255)
aGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGACGGTCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAAACGGT‑GCCTGCaaa > 1:287067/1‑238 (MQ=255)
cgcCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCTTGGAACGGCGGGGTGGGGGAGATCCTATTCAAACGCCCCTTTCCCCC‑GGGAAAAAAGGttccgtcaacaaa > 1:849918/1‑228 (MQ=255)
cccTGTTTGCGCGATCCCTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACtt < 1:736841/239‑1 (MQ=255)
cccTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTTAACT‑CCGAAAAAAAGAT‑GCTGGCAAAAACt > 1:1019072/1‑238 (MQ=255)
cttttttGCGCGATCTCTTCGTGGAAGCC‑AAAGGTCTCATCCAGCACGGCCGGAGAAGGCAGGAAGGGGTGCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTc < 2:1204967/235‑1 (MQ=255)
ccggTTTGCGCGATCCCTTCGTGGAAGCC‑AAATTGCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTc < 1:1298605/236‑1 (MQ=255)
ccTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGCTGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGAGGATCATATTCAAACC‑ACCTTTCACCT‑CGGGAAAAACCTT‑GCTgtgcacaacat > 1:291824/1‑228 (MQ=255)
ccTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATATCAAAAAG‑ACCTTTTACCC‑CGGGAAAAACGTT‑GCTGGCAAAAAcat > 1:47851/1‑236 (MQ=255)
ccTGTTTGCGCGAGCACCTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑TTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCAACGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTc < 1:818996/239‑1 (MQ=255)
gcggGATCCTTTCTTGTAAGCA‑AAATTTCTCCGCCAGCCCGTCCGGATAAGGCAGGAAGGGGGTCGCTACAATTCGCAG‑GTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCa < 2:663098/239‑1 (MQ=255)
cgcaATCCCTTCGTGTAAGCC‑AAAGTTCCCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTCCAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCAcc < 1:387998/202‑1 (MQ=255)
gcgATCCCTTGGGGGAAGCA‑AAATGGCCCACCCACCCCGTCCGGAAAAGGCAGGAAGGCGTTCGCTACAATTCGCCG‑CCTGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAac < 2:1127016/239‑1 (MQ=255)
tCACTTCGGGGAAGCC‑AAATGTCTCATCCGGGCCGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑Cg < 1:562136/239‑1 (MQ=255)
ctgcGTGGAAGCC‑AAATGTCTGATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTg < 1:927972/236‑1 (MQ=255)
cTTCGTGGAAGCC‑AAATTTCTTCTCCAGCACGGCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTg < 1:242947/239‑1 (MQ=255)
ggAAGCC‑AAATTTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CCCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGc < 1:1119743/238‑1 (MQ=255)
ctcATCCAGCGCGTCCGGAAAAGGCAGGAAGGCGTTCGCTACAATGCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCgg < 1:1362704/238‑1 (MQ=255)
ctcATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTAAAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCgg < 1:1156429/238‑1 (MQ=255)
gTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccg < 1:1326571/239‑1 (MQ=255)
cctgATAAGGCAGGAGGTGTTTCGTTAATATTCGCAG‑TTCGCCGCCGGTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAACCG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgcc < 2:534849/236‑1 (MQ=255)
cGGATAGGGCGGGAAGGGGTTAGCTTCACTGCCCAGTCTC‑CCCCCGCTATTAAGATGACCACCCGCCCCGGGAATCAGGGTTTGGGCCGCTTCCAGGCTGGTTTGCATTCCATCGTGGAAAGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgcc < 2:287067/238‑1 (MQ=255)
cGGATAAGGCAGGAAGGCGTTCCGTACAATTCGCAG‑CTCGCCGCCGGTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgcc < 1:32040/238‑1 (MQ=255)
ggCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATATCAAAACG‑CCCTTTTCCCC‑CGGAAACGACGTC‑GCTGGCAAAGACTTCCCCTTC‑ACACACGTTTGCCGCACGAGTTGCGGCGCTGGCCTCTACCGCCgggggcag > 1:1289063/1‑235 (MQ=255)
ggCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTTGGGTTGTGAATATCAAAAAC‑ACCCTTCCCCTCCGGAAAAG‑CGGT‑GTTGGCAAAGACCTTCCCTTAACAAC‑CCTTTGCCGCCACAGGTGCGCCGGCGGCTCCTCCCCCCCGGGcgaa > 2:362734/1‑236 (MQ=255)
ggAGGGCTTTCGCTAAAATGCGCAT‑CTCGCCGCCGTTATTAAGATGACGCGCCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGAc < 2:121922/238‑1 (MQ=255)
aaGGCGTTCGTTACAATTCGCAG‑CCCGCCGCCGCTATTAAGATGACGCCCCGCACCGCGAATCAGCGTTTGCCCCGCATCCAGGCTTGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑GCCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACa < 1:1326111/237‑1 (MQ=255)
aaGGCGTTCGTTAAAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACAt < 1:538540/238‑1 (MQ=255)
cGCTCCAATCCGCAC‑CTCCCCGCCGCTATTAAGATTACGCACCGCACCGCGAATCAGCTTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAgg < 1:1264301/239‑1 (MQ=255)
cccaCAATTCGCGG‑CCCGCCCCCGCTATTAAGATGCCGCCCCCCACCGGGCATCAGCGTTTGCGGCGCATCCAGGCTGGTTTGCATCCCAGCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGt < 2:1289063/236‑1 (MQ=255)
aCGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCCCAAGGGGAGACG‑GATTTTCGGCGAAGGGGCCGCAAAg‑gga > 1:1199815/1‑236 (MQ=255)
aCGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGATGATCATATCAAAACG‑ACCTTTCAACT‑CGGAAAAAACGTT‑GCTGGCAAAGACTTTCCCCTCAACAC‑CGTTGGCCGCAAGGGTTTGCCGGCGGGCTTCTCCCCCCGGGGCCGGGGAAACCCACAAGGGGGGGCGAAATTTATGGGAAATGGCG‑GCAAAA‑GCaa > 2:872073/1‑239 (MQ=255)
gccccgcGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAg < 1:362734/236‑1 (MQ=255)
gcaccggGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAg < 1:210145/239‑1 (MQ=255)
ggAATCCGCGTTTGGGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCG‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGcc < 1:255266/238‑1 (MQ=255)
aaTCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTgaga < 1:966833/193‑1 (MQ=255)
tGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGGTCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTTACCTTCAACAC‑CGTTGGCCGCAAGGGTTGCGCGGCTGGCCTCTACCGCCGGGGGAGAGACATCCCCCAAGGTGAGACG‑AATTTTCg > 2:966833/1‑193 (MQ=255)
tccccccagccAGGCGTGTTTGCCACCCCGCGGTGAACGGCGGTTGGGAGATGAACATACCAAACCC‑GTGTTTCACCT‑CGGAAAGGACGTT‑GCTGGCAAAGGCTTCCCCTTCAACCC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCg < 2:1098056/230‑1 (MQ=255)
cagaTCCAGGCTGGTTTGCAACCCATCGGGGAACGGCGGGTTGGAGATGAACATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACa < 1:462033/235‑1 (MQ=255)
gcATCCCGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTGCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATc < 1:1157021/239‑1 (MQ=255)
cctCCAGGGTGTTTGTCTTCCCATCGTGGAACGGGGGGTTGGGGATGATCATACAAAAACG‑ACCTTTCCCCG‑CGGAAAAGACGTT‑GCTGGCAAAGCCTTCCCCAGCAACCC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATcc < 2:34802/237‑1 (MQ=255)
atctcAGGCTGTTTTGCACCCCATCGGGGAACGGGGTGTTGGACATGATCATCTCAAAACG‑ACCTTTGACCA‑CGAAAAAGACGTT‑GCTGGCAAAGCGTTCACCGTCAACGC‑CGTTGGCCGCAATTGTGTGGCGGCTGGCTTCTGCCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTCCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATcc < 2:357124/235‑1 (MQ=255)
ctCCAGGTTTGTTTTCCTCCCATCGTGGAACGGCGGGTTGGCAATGATCATATCAAAACG‑CCCTTTCCCCT‑CGGAAAAGGCGTT‑GCTGGCAAAGCCTTCACCTTCAACAC‑CGTTGGCCGCAAGTTTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCa < 2:1299561/238‑1 (MQ=255)
aTCCAGGCTGTTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑GCCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCa < 1:1183053/239‑1 (MQ=255)
aTCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCCCCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCa < 1:424039/239‑1 (MQ=255)
gCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCCCCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTc < 1:1160721/239‑1 (MQ=255)
cATCGTGGAACGGGGGGTTGGGGATGTTCATATCAAAACC‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGAAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGc < 1:250962/239‑1 (MQ=255)
cATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGc < 1:1082118/239‑1 (MQ=255)
cATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CCGAAAAGACGTT‑GCTGGCAAAGACATCAACTTCAACAC‑CCTTTGCCGCCAGAGTTGCGCGGCTGGCTTTTACCGCCGGGGCAGAAGCATCCCACAAGGGGAGACG‑AATTTTTGACGCAAGACGCGCAAAGAGCAACACAAAACACCCACGCCCCA‑ACCCCACCACCAACACTTTAACCTTctaggcg > 2:456929/1‑233 (MQ=255)
cATCGTGGAACGGCGGGTTGGAGATGATCATAACAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTGGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGc < 1:879161/239‑1 (MQ=255)
gAACGGGGGGTTGGAGATGATCAGATCAAACCG‑GCCTTTCCCCT‑CGGAAAAGGCGTT‑GCTGGCAAAGCCTTCACCTTAAACAC‑GTTTGCCCGAAAGTGTTGCGCGGCTGGCTTCTCCCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGtt < 2:849771/238‑1 (MQ=255)
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GATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCC‑AAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAG‑CTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACG‑ACCTTTCACCT‑CGGAAAAGACGTT‑GCTGGCAAAGACTTCACCTTCAACAC‑CGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACG‑AATTTTCGGCGAATGGCGCGCAAAG‑GCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTT > NC_000913/4606664‑4607125
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
