Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 165 96.4 2178490 87.4% 1904000 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,3801.C97.9% 282.0 / ‑3.0 92intergenic (+586/+56)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand):  ref base . (0/2);  new base C (46/43);  total (47/45)
Fisher's exact test for biased strand distribution p-value = 2.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
*NC_0009134,296,3802.G97.9% 274.4 / ‑3.1 92intergenic (+586/+56)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand):  ref base . (0/2);  new base G (47/43);  total (47/45)
Fisher's exact test for biased strand distribution p-value = 2.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA‑‑C‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCGGGAAA  >  NC_000913/4296215‑4296602
                                                                                                                                                                      ||                                                                                                                                                                                                                                   
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGAGGCTTGCCGCGTCTTATAAGGCCAATCTTAACCGGTGGGTAAt                                                                                                                                                          >  2:885126/1‑239 (MQ=11)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt                                                                                                                                                          >  1:857109/1‑239 (MQ=21)
  caggccAATAGCCTGATTTAGCTTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACCTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGGCATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa                                                                                                                                                           <  1:565710/231‑1 (MQ=11)
     cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAGGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑c                                                                                                                                                    >  1:742651/1‑239 (MQ=255)
     cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACACCAATGCCTGATGCGACCCTTGCCGCCCCTTATCAGCCCTTCCTTACCCGTGGGTTAATTTTT‑c                                                                                                                                                    >  2:856218/1‑239 (MQ=11)
        aaTTGCCTGATTTAGCGTTATTTTTTAGGTCGGATAAGGGGTTTATGCCTCAATCGACATCAACGCCTGATGCGACGCTTAACGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑Caaa                                                                                                                                                 <  1:929495/239‑1 (MQ=14)
          tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTTCCGCGTCTTTTCCGGCCCATCTTAACCGTTGGTTAATTTTT‑Caaca                                                                                                                                                >  2:681949/1‑236 (MQ=11)
               tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGTTGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTc                                                                                                                                           >  1:471609/1‑238 (MQ=255)
                   ttAGCGTGATTTTGTAGGTCGGATAAGGCCTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACAcc                                                                                                                                      <  1:931910/239‑1 (MQ=255)
                    tgggggtaTTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACAccc                                                                                                                                     <  1:204183/232‑1 (MQ=255)
                    tAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAGGCCGCAGCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACAccc                                                                                                                                     <  1:569245/239‑1 (MQ=255)
                    tAGCGTGATTTTGTAGGTCCGATAAGGCGTTTAAGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACAccc                                                                                                                                     <  1:681949/239‑1 (MQ=255)
                    tAGCATGATTTTGTAGGCCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACAcc                                                                                                                                      <  1:471778/238‑1 (MQ=255)
                       cGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGGCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGTTTACGC‑‑CG‑‑CATCCTACATCAATCACTTATGCGACGCTTGCCGCGTCTTATCAGGCCTACCTTAACCGTTGGGTCATTTTTACAAAC‑CTTCCCACCCggg                                                                                                                                  >  2:504625/1‑238 (MQ=11)
                           tttttttggctCGGTTAGGGCGTTTTGCCCGCATCAGACATCAACGCCTGAGGCGACGCTTAACGCGTTTTATAGTGCATCCCCCAGAACGCGCAATAGCCTGATTTGGCGTGATTTAGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTACCCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCa                                                                                                                              <  2:278993/229‑1 (MQ=14)
                            gttggTAGGTCGGATGAGGCGTTTATGCCGCATCAGACCTTAACGCCTGATGCGACGCTTAACGCGGCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCa                                                                                                                              <  1:205995/234‑1 (MQ=17)
                             tttGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCaaa                                                                                                                            <  1:14422/239‑1 (MQ=255)
                             tttGTAGGTCGGAAAAGGGCTTTATGCCGCAACCGACAACAACGCCTGAGGGGACCCTGAACGCGTCTTATCAGGCCTACGCCAGAACGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCaaa                                                                                                                            <  1:97669/239‑1 (MQ=17)
                             tttGGAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCaaa                                                                                                                            <  1:709772/239‑1 (MQ=255)
                             tttGGAGGGCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCaaa                                                                                                                            <  1:709676/239‑1 (MQ=255)
                                  aGGTCGGATAAGGGTGTTATGCCGCATCCGACATCAACGCATGATGCGACGCTTAACGCGGCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCtt                                                                                                                       <  1:386428/239‑1 (MQ=17)
                                      cGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAACCTCTTCCCACCCGGAATCAAACCCTTCCAt                                                                                                                   >  1:532275/1‑239 (MQ=255)
                                       ggaataGGCGTTTATGCCGCAACCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATa                                                                                                                  <  1:1087986/234‑1 (MQ=255)
                                       ggATAAGGCTTTTATGCCGCATCCGACAGCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATa                                                                                                                  <  1:59078/239‑1 (MQ=255)
                                        taaggggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATa                                                                                                                  <  1:13935/233‑1 (MQ=255)
                                            aGGCGTTTATGCCGACACCGGCATCAACGCCTGATGCAACGCTTAGCGCGTCTTAGCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCt                                                                                                             <  1:509343/239‑1 (MQ=17)
                                                  ttATGCCGCATCCGACCTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGt                                                                                                        <  1:878071/238‑1 (MQ=255)
                                                   tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGGCATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCTTAACCGTTGGTTAATTTTT‑CAAACTCTTAACACCCGGTATCAAACCCTTCCATAAAACACAGTTTc                                                                                                      >  2:927433/1‑239 (MQ=17)
                                                   tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTc                                                                                                      >  1:374222/1‑239 (MQ=255)
                                                     tGCCCCACCCGACATACACGCCTGTGGGGACGCTTAACGCGTTTTATCAGGCCTCCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc                                                                                                   <  2:453842/239‑1 (MQ=18)
                                                      tcccgaTCCGAATTCAAAGCCTGTTGGGACGTTTAACGGGTCTTATCAGGCCTACGCCAGAAAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc                                                                                                   <  2:113134/234‑1 (MQ=18)
                                                      gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGGGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc                                                                                                   <  1:585511/239‑1 (MQ=255)
                                                      gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc                                                                                                   <  1:839930/239‑1 (MQ=255)
                                                           aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCTGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa                                                                                                                                                            >  1:20780/1‑178 (MQ=255)
                                                           aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa                                                                                                                                                            <  2:20780/178‑1 (MQ=255)
                                                           aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc                                                                                                   >  1:286618/1‑234 (MQ=255)
                                                            tCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGc                                                                                             >  1:1066662/1‑239 (MQ=255)
                                                             ccGCCATCAACGCTTGATGCGACTCTTAACGGGTTTTTTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCa                                                                                            <  2:374222/239‑1 (MQ=18)
                                                               gaaaTCCACGTCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAgc                                                                                          <  1:856218/236‑1 (MQ=255)
                                                                   tCAACGACTGATGCGACGCTTAACGGGTCTTATCCGGCCTACGGCAGCCCGCGCAATAGGCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCt                                                                                      <  1:70454/239‑1 (MQ=21)
                                                                     aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑Caaa                                                                                                                                                 <  1:542545/178‑1 (MQ=255)
                                                                     aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑Caaa                                                                                                                                                 >  2:542545/1‑178 (MQ=255)
                                                                           tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAATACCTTCACACCCGGTTTCAAACCACTCCATACAGCCCCGGTTCAACCAAGCCAACGCCTTTTg                                                                                  >  2:487270/1‑235 (MQ=17)
                                                                             aTGCGACGCTTAACGCGTCTTATCAGGCCTACTCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CACACTCTTCACACCCGGTATCAACCCCTTCCATTCAGCTCAGGTTCACTCATTGTATCGCCTTTTGCCTGtt                                                                            >  1:697480/1‑239 (MQ=18)
                                                                                   cGCTTAACGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTtcttct                                                                       <  1:369136/238‑1 (MQ=255)
                                                                                       tagcgcgTTGTATCAGGCCTACGGCAGGCAGCGGAATTGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATa                                                                  <  1:777591/236‑1 (MQ=25)
                                                                                         aCGCTTTTTTTCCGGCCTAGCCCGGACACGGCAATTGCCTGATTTGGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATaaa                                                                <  2:454397/239‑1 (MQ=25)
                                                                                           gcgTCTTATCAGGCCTACGCAAGACAGCGCAATAGCCTGATTTAGCGTGATTTGGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAAc                                                              <  1:701050/239‑1 (MQ=255)
                                                                                               cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCt                                                                                      >  2:458194/1‑211 (MQ=255)
                                                                                               cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCt                                                                                      <  1:458194/211‑1 (MQ=255)
                                                                                               cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGCCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCCCACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACct                                                            >  1:78350/1‑237 (MQ=255)
                                                                                                 tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACcttctt                                                        <  1:36360/239‑1 (MQ=255)
                                                                                                  aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCttcttc                                                       >  2:795380/1‑239 (MQ=255)
                                                                                                   tCAGGCCCCAGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTTTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCa                                                      <  2:78350/239‑1 (MQ=255)
                                                                                                       gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGt                                                  >  2:947711/1‑239 (MQ=255)
                                                                                                       gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGt                                                  >  1:480990/1‑239 (MQ=255)
                                                                                                       gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCATGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCTGTGCAGGGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCAACGt                                                  >  1:322162/1‑239 (MQ=255)
                                                                                                       gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGATTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAATGAAGGCCCTTTTGCTTGTCCTTCTCGTACAACCCTTCTTAACCGt                                                  >  1:442442/1‑239 (MQ=21)
                                                                                                            cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc                                                                                                   <  1:243771/185‑1 (MQ=255)
                                                                                                               cAGACAGCCAAAAAGCCTGATTTAGCGTGATTTGGTAGGTCGGATAAGGCTTGTACGC‑‑CG‑‑TATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTACCCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTGCTTCTCGATAAAACCTTCTTCACCGTTTAAGAAc                                          <  1:280193/239‑1 (MQ=37)
                                                                                                                 gACAGCGCAATAGGCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTa                                                                                                                                 <  2:1056268/150‑1 (MQ=255)
                                                                                                                 gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTa                                                                                                                                 >  1:1056268/1‑150 (MQ=255)
                                                                                                                 gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAAcat                                        >  1:117260/1‑239 (MQ=255)
                                                                                                                 gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAAca                                         >  2:24337/1‑238 (MQ=255)
                                                                                                                  aCAGGGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGAAATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCaaa                                                                                                                            <  2:470977/154‑1 (MQ=18)
                                                                                                                  aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCaaa                                                                                                                            >  1:470977/1‑154 (MQ=255)
                                                                                                                  aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAACCCTTCTTCACCGTTTAAGACcatc                                       >  1:581869/1‑239 (MQ=255)
                                                                                                                  aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAAca                                         >  1:871462/1‑237 (MQ=255)
                                                                                                                  aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGATCAACCACGGAAGCGCCTTTTGCTTGTTCTTTCCGATAAACCCTTTTTCACCGTTTAAGAAcatc                                       >  2:774209/1‑239 (MQ=25)
                                                                                                                      cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CACACTCTTAACACCCGGTATCAAACCCTTCAATACAGCTCAGGTTCAACCAGTGCAGCGACTTTTGCTTGTTATTCTCGATAAAACCTCCTTCACCGTTTAAGAAAATCAtt                                    >  1:207475/1‑238 (MQ=25)
                                                                                                                      cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCAtt                                    >  1:435189/1‑238 (MQ=255)
                                                                                                                      cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTAACCGTTTTAGAACATCAtt                                    >  1:63778/1‑238 (MQ=255)
                                                                                                                      cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTCCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCAtt                                    >  1:350499/1‑238 (MQ=255)
                                                                                                                             gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCa                            <  1:149934/239‑1 (MQ=255)
                                                                                                                              ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACTCGGTATCAAACCCTTCCATACAGCTCAGGTTAAACCAGTTCAGCGCCTTTTGCTTGTTCTTCTCGATCAAACCTTCTTCACCGCTTAAGAACATCATTccaaccccg                           >  1:334795/1‑232 (MQ=37)
                                                                                                                                tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAAAACATCATTCCCGcccctt                          >  2:417986/1‑235 (MQ=255)
                                                                                                                                tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCACCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGccccga                          >  2:489961/1‑235 (MQ=255)
                                                                                                                                  aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCCGTAc                        >  1:869015/1‑238 (MQ=255)
                                                                                                                                        cGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGCCATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGttcttc                                                                        <  1:839750/184‑1 (MQ=255)
                                                                                                                                        cGTGATTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATCCAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGttcttc                                                                        >  2:839750/1‑184 (MQ=255)
                                                                                                                                            aTTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCGGAACTCGGAATaaac             >  2:611261/1‑237 (MQ=255)
                                                                                                                                            aTTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTATTCGGCATAAcc             >  1:1073142/1‑239 (MQ=255)
                                                                                                                                            aTTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTGGTTCTTTTCGATAAAACCTTCTTCACCGTTTACGAACATCATTCCCGCCCAGTACCCGGAATAAcc             >  2:774245/1‑239 (MQ=255)
                                                                                                                                            aTTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCACCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCTCCCAGTACTCGGAATAAcc             >  1:107471/1‑239 (MQ=255)
                                                                                                                                            aTTTTGTAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTACCAAACCCTTCCATCCAGCTCAGGTTCACCCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAACAACATCATTCCCGCCCAGTACTCGGAATAAcc             >  2:2790/1‑239 (MQ=255)
                                                                                                                                               ttgttgGTCGGATAAGGCGTTTA‑‑CGTCG‑‑CATCCGCAATGAATGCCTGTTGCGACGCTTGCCGCGTTTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGt          <  2:220542/239‑1 (MQ=255)
                                                                                                                                                  tAGGTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCATTACTCGGAATAACCGGTTCg       >  2:309698/1‑239 (MQ=255)
                                                                                                                                                     ggcGGATAAGGGGTTTACGC‑‑CC‑‑CATCCGACATCAATGCTTGATGCGACGCTTGCCGCGTTTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCGGGa    <  2:1073142/237‑1 (MQ=255)
                                                                                                                                                     gTCGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCGGGa    >  2:762818/1‑239 (MQ=255)
                                                                                                                                                      tCGGATAAGGGTTTTACGC‑‑CG‑‑CTTCCGAAATAAATGCCTGAGGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCCCACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCGGGa    <  2:1066662/238‑1 (MQ=255)
                                                                                                                                                       cGGATAAGGCGTTTACGC‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGAACCCGGAAAAACCGGTTCGGGaaa  >  2:722432/1‑239 (MQ=255)
                                                                                                                                                        ggATAAGGGCTTTA‑‑C‑‑CCCCCATCCGACATCAATGCCTGATGCTACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCGGGaaa  <  2:857109/238‑1 (MQ=255)
                                                                                                                                                                      ||                                                                                                                                                                                                                                   
GACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA‑‑C‑‑CG‑‑CATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTT‑CAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCGGGAAA  >  NC_000913/4296215‑4296602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A