Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F9 I0 R1
|
81 |
94.4 |
2603848 |
74.4% |
1937262 |
227.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,296,380:1 |
+CG |
100% |
intergenic (+586/+56) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,296,380 | 1 | . | C | 96.3%
| 300.1
/ 0.6
| 106 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base C (51/49); total (54/52) |
| Fisher's exact test for biased strand distribution p-value = 6.18e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
| * | NC_000913 | 4,296,380 | 2 | . | G | 96.3%
| 307.9
/ 0.5
| 106 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base G (53/48); total (54/52) |
| Fisher's exact test for biased strand distribution p-value = 3.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 106 total aligned reads displayed.
CGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑A‑‑C‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCGGGAAATTGCAGA > NC_000913/4296210‑4296609
||
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATTAGGCGTTTATGCCGCATCCGCCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAAGCCTACGCCAGACGGCGCCTAAGCCTTATTTAGCGTGATTCTGTAGGTCGGGTAAGGTGTTG‑‑ACGC‑‑CGCATCCGACATCAATTCTTGATGCCGCGCTTCCCGCGCTTTTTCAGCCCTATATTACCAGTGGGTTAATTTTTc > 2:867306/1‑239 (MQ=11)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGTGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:830347/1‑239 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:186330/1‑239 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATCCCTGCTGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:785993/1‑239 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCACATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACCCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:27065/1‑239 (MQ=255)
aaTGGCCTGATTTAGCGGGATGTGGTAGGTCGGATAAGGCGTTTTTGCCGCCTCCGACATCAACGCCTGATGCGACCCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 1:662633/239‑1 (MQ=14)
aaTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 1:1140772/239‑1 (MQ=255)
aaTAGCCTGATTTAGCGTGATTTTGGAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 1:1151623/239‑1 (MQ=255)
tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGCTTTAGCGTGCTTTTTGTGGTCGACTAAGTCGTTTCCG‑‑C‑‑CCCACCTGACATCAATCCCGGAAGGACCGCTTGCCGCGTCTTACCCGGCCTATCTTAACCCTTGGTTACATTTTCCAAcctttc > 2:206474/1‑233 (MQ=11)
tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTca > 1:15714/1‑239 (MQ=255)
tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc > 1:213700/1‑238 (MQ=255)
tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTACCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTAATTCACACCTTCCCCCGTCTTTTCAACCCAATCTTAACCGTTGGTTAATTTTTTAAACCCttaa > 2:381100/1‑237 (MQ=11)
tGATTAAGCGTGTTTTTGTAGAGCTGATAGGGCGTTTATGCCGCATCCGACCTGAACGCCTGATGGGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTca < 1:867306/239‑1 (MQ=14)
aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCCATAGCCTGATTTAGCGTGATTTTGTAGTCCGGCTACGGCGTTT‑‑ACGC‑‑CGCATCCTACATCAATGACCGATCCGACGCGTGCCTCGTCTTATCAACCCTCTCTTAACCCTTTGTTAATTTTTCAAActcccaaaa > 2:855230/1‑233 (MQ=11)
ttAGCGGGATTTTGTAGGGCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc < 1:1116432/239‑1 (MQ=255)
tAGGGTGGTTTTGTAGGGCGGATAAGGCGTTTATGCCGCATCCGAAATCAACGCCTGATGCGACGGTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAccc < 1:584777/239‑1 (MQ=14)
tAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCTTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAccc < 1:341475/239‑1 (MQ=255)
cGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTATCTTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGCCTTTTCAGGCCTATCTTAACCGTTGGTTAATTTTTTAAACCCTTCCAACCCgga > 2:732649/1‑238 (MQ=14)
cGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACTTCAATGCCTGATCCGACGCTTGCCGCGCCTTTTCAGGCCCTTCTTAACCGTTGGTTAATTTTTAAAAACCTTCACACCCGGt > 2:6048/1‑239 (MQ=14)
cGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGt > 1:1293443/1‑239 (MQ=255)
tttGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa < 1:1087067/239‑1 (MQ=255)
tttGGAGGTTGGAGAAGGCGTTTATTCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa < 1:801218/239‑1 (MQ=255)
tCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGGTGCGACGCTTGCCCCGGCTTACCAGGCCTATCTTAACCTGTGGTTAATTTTTTAAACTCTTCAAACCCGGGACCAAA‑ACCTTCCa > 2:573101/1‑239 (MQ=14)
cgATAAGGCGTTTAACGCGCATCCGGCATCAACGGCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATa < 1:1291072/238‑1 (MQ=17)
aaGGGGTTTAGTCCGCATCCGGCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGc < 1:423576/239‑1 (MQ=255)
aGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCt < 1:381100/239‑1 (MQ=255)
aGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCt < 1:6048/239‑1 (MQ=255)
aGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCt < 1:302990/239‑1 (MQ=255)
aGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTAACAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCt < 1:605589/239‑1 (MQ=255)
ttctGCCGCATCCGAAATCAACGCCTGATGCGACGCTTAACTGGTTTTATCAGGCCTACGCCAGACAGCGTAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGt < 1:896769/235‑1 (MQ=18)
tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCACTGCCTGATGCGACGCTTGCCGCGCCTTATCAGGCCTATCTTAACCGTTGTTTAATTTTCAAAACTCTTCACACCCGGAATCCAA‑CCCTTCCATGAACGTCAGGTTc > 1:225117/1‑239 (MQ=14)
tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCAAACCCGGGATCAAA‑CCCTTCCATACACCCCAGGTTc > 2:711794/1‑239 (MQ=255)
gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAAc < 1:516013/239‑1 (MQ=255)
gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAAc < 1:206474/239‑1 (MQ=255)
tCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGGTAATTTTTCAAACTCTTCACACCCCGTACCAAA‑CCCCTCCATACACCCCCGGTTCAACCaccc > 2:516013/1‑235 (MQ=17)
aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAgt > 1:271410/1‑237 (MQ=255)
tccaCGCCTGATGCGATGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCt < 1:1030514/236‑1 (MQ=255)
tCAACGTCTGATGCGATGCTTAACGCGTCTTAGCAGGCCTACGGCAGGCAGCGCAATAGCCTGATTGAGCGTGAGTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTACCCGTTGGTTAATTTTTCAATCTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCt < 1:284294/239‑1 (MQ=18)
cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCtttt > 1:289607/1‑238 (MQ=255)
aTGCGAGGCTTAACGCGTCTTATCAGGCCTACGCCAGGCAGCGCAATACCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGTTT‑‑ACGC‑‑CGCATCCGCCATCAATGACTGCTGCGCCGATTACCGCGTCTTATCGGACCTATCTTAACCGTTGCTTCATTTTTCAACCTCTTCACACCCGCCATCAAA‑CCCTTCCATACAGCTCACGTTAACCCATTGCACCGCCTTTTAC‑Ttttt > 2:291106/1‑239 (MQ=17)
gaccgttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGGAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGttctt < 1:82217/233‑1 (MQ=255)
gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGttctt < 1:825055/238‑1 (MQ=255)
caCGCTTTAGGTGTCTTATTAGGCCGACGGGAGGCACCGCAATGGCCTGATTTCGCGTGAGTTTGTGGGTCGGAGAAGGGGTTT‑‑ACGC‑‑CGCAACCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAGCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGttctt < 2:107693/237‑1 (MQ=21)
ccGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTATGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGCCATCAATGCCTGATGCGCCGCTGGCAGCGTCTTATCAGGCCTATCTTCACCGTTGGTTAATTTTTCTAACCCTTCCCACCCGTGCTCCAC‑CCCTTCCATACAGCTCAGGTTCACCCAGTGCATGCCGTTTTGT‑TTGttctttt > 2:836007/2‑237 (MQ=17)
aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGttcttc < 1:1240982/238‑1 (MQ=255)
cgcgttaagcgTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTtctc > 1:475143/9‑239 (MQ=25)
aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATaaa < 1:882845/239‑1 (MQ=255)
aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATaaa < 1:732649/239‑1 (MQ=255)
gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACct > 1:595442/1‑239 (MQ=255)
tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATCCAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGCTAAAACct > 1:581844/1‑238 (MQ=255)
cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTGTTCACACCCGTGATCAAC‑CCCTTCCATACACCTCAGGTTCAACCAGTTCAGCCCCTTTTTCTTTGTTC‑TCTCGAAAAAACct > 2:1286397/1‑237 (MQ=18)
cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCt < 1:912472/188‑1 (MQ=255)
cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCATTGGTTAATTTTTCAAACTCTTCACCCCCGGTATCAAA‑CCCTTCCATACAGCt > 2:912472/1‑188 (MQ=255)
ttaGGCCCTCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTATCCGTTGGTTAATTTTTCAATCTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCa < 1:505803/237‑1 (MQ=25)
tCAGGGCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGTATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCttcttcg < 1:1180425/239‑2 (MQ=255)
cAGGCCTACGCCAGACAGCGTAATAGCCGGATTTTGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCAc < 1:455019/239‑1 (MQ=255)
gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt > 2:795129/1‑136 (MQ=255)
gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt < 1:795129/136‑1 (MQ=255)
gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGAAGCTTGCCGCGTCTTATCAGTCCTATCTTAACCGTTGGTTACTTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATAAAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTTTTCTTGATAAAAATTTCTTAACCGt > 2:231924/1‑239 (MQ=25)
tACGCCAGACAGCGCAATAGCCTTATTTAGCGTTATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTa < 1:231924/239‑1 (MQ=255)
cGCCAGACAGCGCAATAGCCTGTTTTAGCGTGATTTTGTAGGTCGGCTACGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGCTTCAAA‑CCTCTCCATACCTCTCCGGTTCACCCAGTCCAGCGCCTTTTGT‑TGGTTCTTCCTGAAAAAACC‑TCATCACCAGTTAAGa > 2:110741/1‑239 (MQ=18)
cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATTCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTACTTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCATTGCAGCCGCTTTTGC‑TTTTTTTTCACCACAAAACCTTCTTCACCGTTTAAg > 2:470572/1‑239 (MQ=21)
cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCCTACAGCCCCGGTTCAACCAATGCAGCGCCTTTTTC‑TTGGTCTTCCCGATAAAACCATCTTCACCGTATaaa > 2:409092/1‑238 (MQ=21)
cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCt < 1:993971/175‑1 (MQ=255)
cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAg > 1:264091/1‑239 (MQ=255)
cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCCCGATAAAACCTTCTTCACCGTTTAAg > 2:538334/1‑239 (MQ=255)
cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACAATTGCACCGCCTTTTTC‑TTTTTCTTTTCGATAAAACCTTTTTCACCGTTAAAg > 2:796038/1‑239 (MQ=25)
gccAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGCTT‑‑ACGC‑‑CGCTTCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTTTCAGGCCTATCTTAACCGGTGGTTAATTTTTCAAACTCTCCACACCCGCTATCAAA‑CCCTTCCCTACCGCCCAGGTTCAACCAGTGCAACGCCTTCTGC‑GTTTTCCTCCCAATCAAACCTTCTTCACCGTTCAAGAAaat > 2:1231457/3‑239 (MQ=21)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc < 1:57014/145‑1 (MQ=255)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc > 2:57014/1‑145 (MQ=255)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑AAGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGCTAAAACCTCCTTCACCGTTTAAGAAca > 1:745445/1‑238 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGCCGCTTGCCGCGTCTTATCAGGCCTCTCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGCATCAAA‑CCCTTCCATACAGCTCAGGTTCCACCAGTGCACCGCCTTTTGC‑CTGTTCTTCTCCATAAAACCTTCTTCACCATTTAAAAACATCCtt > 2:1086307/1‑238 (MQ=25)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCTGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCAtt > 1:1232043/1‑238 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCAtt > 1:448139/1‑238 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCAtt > 1:1275122/1‑238 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCAtt > 1:85144/1‑238 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCAtt > 1:103384/1‑238 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCAtt > 1:1017289/1‑238 (MQ=255)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTCCAACCAGGGCAGCGCCTTTTGC‑TTGTTCTTCTCGTTAAAACCTTCTTCACCGTTTAAGAACATCAtt > 1:558876/1‑238 (MQ=255)
gcacttgcttGATTGTGCGTGATTGTGTAGGGCGGATAAGGCGTTT‑‑ACGC‑‑CCCATCCTAACTCAATGCCGGAGGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTc < 2:27065/229‑1 (MQ=37)
gcAATAGCCTGATTTAGGGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCCACATCAATGCCTGATGCGACGTTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAAcat < 1:111806/233‑1 (MQ=255)
gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTc < 1:466871/238‑1 (MQ=255)
gaaaTAGGCTGATTTAGGGTGATTTTGGAGGTCGGATAAGGCGTTT‑‑A‑‑CCGCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTc < 1:1084456/236‑1 (MQ=255)
cAATAGCCTGATTTAGCGTTATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATTATTccc < 1:1272598/239‑1 (MQ=255)
tagtgtGATTTAGCGTGATTTTTGAGGGCGTCGAAGGCTTTT‑‑ACGC‑‑CGCATCCGACATCAATGCTGGATGCGACGCTTGGCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGcc < 2:785993/234‑1 (MQ=255)
tAGCCTGGTTTAGCGTTGTGTGTTGGGTCGGAAAAGGCGTTT‑‑ACGC‑‑CGCCTCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGcc < 1:780777/239‑1 (MQ=38)
tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCTGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATa > 1:147492/1‑155 (MQ=255)
gCCTGTTTTAGCGTGTTTTTGTAGGGCGGATAAGGCGTTTCCG‑‑C‑‑CGCATCCGACATCAATGCCTGATTCGACGCTGGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCa < 2:1017289/239‑1 (MQ=255)
tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTa < 1:538334/239‑1 (MQ=255)
taTTTAGGGTGTTTTTGTAGGTCGGATTAGGCGTTT‑‑ACCC‑‑CGCATCCGACATCAATGCCTGATGCGACTATTGCCGCGTCTTATCAGGCCTATCTTAACCTTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTAc < 2:871965/238‑1 (MQ=255)
aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACt < 1:1108800/239‑1 (MQ=255)
tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACt < 1:782537/238‑1 (MQ=255)
tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTCTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACt < 1:592995/238‑1 (MQ=255)
tgtggtttttGTAGGTCGGATAAGGCTTTTTCG‑‑C‑‑CGCACCCTAAATCAATGCCTGAGGCGACGCTTGCCTGGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCCTTCCATACAGCTAAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCGCCGTTTAAGAACATCATTCCCGCCCAGTACTCGGa < 2:1020593/233‑1 (MQ=255)
gATTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAAAATCATTCCCGCCCAGTACTCGGATTac > 1:209801/1‑237 (MQ=255)
gATTTTGGAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAAc < 1:20087/239‑1 (MQ=255)
aTTTTGTAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATaaaa > 1:662720/1‑189 (MQ=255)
tAGGTCGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCg < 1:938815/239‑1 (MQ=255)
cGGATAAGGCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCCGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGCTTCGGGaaa > 1:833691/1‑239 (MQ=255)
ggCGTTT‑‑ACGC‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGCTAAAACCTCCTTCACCGTTTAAGACCTTCATTCCCGCCCAGTAACCGGAATAACCGGTTCGGGAAATTGCaaa > 2:421176/1‑237 (MQ=39)
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CGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑‑A‑‑C‑‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAA‑CCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGC‑TTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCGGGAAATTGCAGA > NC_000913/4296210‑4296609
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
