Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
95 |
78.2 |
1797446 |
84.3% |
1515246 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,449,045 |
T→G |
25.0% |
intergenic (+3/+77) |
chpB → / ← ppa |
toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,449,045 | 0 | T | G | 25.0%
| 122.7
/ 5.7
| 67 | intergenic (+3/+77) | chpB/ppa | toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base T (11/36); new base G (18/2); total (29/38) |
| Fisher's exact test for biased strand distribution p-value = 4.33e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTAAC > NC_000913/4448808‑4449283
|
cTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGgt‑g < 1:1850/239‑1 (MQ=255)
cTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGgt‑g < 1:207477/239‑1 (MQ=255)
ggAATGGGGTTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCTGTAGGCCGGATTTAGCGTTCCTTGACATTGGGAAGAAGGCGATGTGCACGGGGTGGTGCTGGGTAATCAGGTGCGGATGATGGATCTGCACGCCCGGTTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTTGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATcg < 2:690030/239‑1 (MQ=255)
gtcGCTGTTGTCCCCCATTTCGGTGGGGTGAAATTTTGCCCGTTAGGCCGTATTTAGGGTTCCTTTGCATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGc < 2:544630/237‑1 (MQ=255)
tggtggCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTAAGCCGGATTTAGCGTTCCTTTACATTGCGAAGAATGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑aaa < 1:87419/239‑1 (MQ=255)
gtggCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAAAGGGGTTATTACGCTTGCAGGGG‑GGG‑GGG‑GGACA‑AAGGG‑GGGTTTTTTTTTTGCGGGCaa‑aaaa > 2:47501/1‑239 (MQ=255)
gCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑aaaaa‑aa < 1:47501/238‑1 (MQ=255)
ccccATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGGGGGGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGG‑GGG‑GGGGTAAAGGG‑GGGTTTTTTTTTCG‑GGGGAT‑aaaaa‑aaa > 2:513692/1‑236 (MQ=255)
ggcggcAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACCCGCCCGGCTGGCAACGCGTATTGGTCTGGCTGCGGATGAGGGGGGGGAAGAGGCGTTATAAACCTTGCA‑GGCGGGG‑GGG‑GGAAA‑CAGGG‑GGGTTTTTTTGTTG‑GGGGAA‑AAAAA‑AACACTTCCAAACCGaa > 2:747765/1‑238 (MQ=255)
ggCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGCTCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAAGCGTTATTACGCTTGAC‑GGC‑GGG‑GGG‑GGGAA‑AAAGG‑GGGTTTTTTTATTGCGGGCCA‑AAAAA‑AAACCTTaacaacgaaa > 2:754869/1‑229 (MQ=255)
ggCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTATGCTTGCA‑GGC‑GGT‑GGG‑GGGAT‑AAGGG‑GGGGTTATTTATTCCGGGCATAAAAAA‑AACCCTAACAAAcaaac > 2:406559/1‑235 (MQ=255)
ggCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTAATAACCGaa > 1:53968/1‑238 (MQ=255)
ggCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGGGGAAGGGGCGTTATAACGCTTGCA‑GGC‑GGTGGGG‑GGGAT‑AAGGG‑GGGTTTATTATTTGGGGGGAA‑AAAAA‑AAACCTTACCAAcaaaa > 2:307946/1‑235 (MQ=255)
gCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGG‑GGGTTTATTTATCCCGGGCCT‑AAAAA‑AAACCTTACTAACCGAAg > 1:624631/1‑238 (MQ=255)
aaaTGTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAATGCTATGTGCACGGCGTGGTGGTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCg < 1:191995/238‑1 (MQ=255)
tttGCTCGTTATGCCGGATTTAGAGTTCCGTTGCAATGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGtt < 1:642474/239‑1 (MQ=255)
tttGCCCTTTATGGCGGATTTAGGGTTTCTTTACATTGCGAAGAAGGCGTTTTGCCCGGCGTGGGGCTGGTTAATCAGGTGCGGATGATGGATCTACACGGCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGtt < 2:67081/239‑1 (MQ=255)
tttGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGtt < 1:262038/239‑1 (MQ=255)
ttggCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGtt < 1:891988/236‑1 (MQ=255)
tttAGTGTTCCTTTACATTGCAGAGAAGGCGGTGTGCCCGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCaga < 2:245928/239‑1 (MQ=255)
gttttCCTTTTCATTTGGAGATAGGGGGTGTGGACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAgaagaa < 2:369950/236‑1 (MQ=255)
gctttCTTTTGCATTGCGAATGAGGCGATGTGGTCGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACCCGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAgaagaa < 2:276592/236‑1 (MQ=255)
gctttCTTTTACATGGCGAAGAAGGGGATGTGCCCGGTGTGGGGCTGGTGAATCAGGTGCGGGTGATGGATCTACCCGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAgaagaa < 2:238322/236‑1 (MQ=255)
gctttCCTTTACAGTGGGAAGAAGGGGATGGGCAGGGTGTGGGGCTGGTGAATCAGGGGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAgaagaa < 2:624631/236‑1 (MQ=255)
gCGTTCCTTTACATTGCGAAGAAGGGGAGTTGCACGGCGTGGTTCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAgaagaa < 1:330871/239‑1 (MQ=255)
ggtCCGTTACATGGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGGCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAgaagaa < 1:442366/235‑1 (MQ=255)
gTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAgaagaa < 1:679862/237‑1 (MQ=255)
ccTTTACATTGCGAGGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATTAGGTGGGGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGTAGGAAA‑TGGGT‑G‑GGTTATTTATGTCGTGGAT‑AAAAACAACCTTTAC‑AACCAGAGACCCGCGTTTAGGGGTATTACGCCCgaaaaaataag > 2:586098/1‑234 (MQ=255)
cATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGGAT‑AAGGG‑GTGTTTTTTTATCGCGGGCCT‑AAAAA‑AACCCTTACTAACCGAAACCCGGCGTTCAGGGGTATTACGCCCAGGGAACttatttat > 1:420547/1‑237 (MQ=255)
aagaagGCGTTGTGCCCGGTGTGGTGTTGGTGAATCAGGGGCGGATGAAGGATCTACACGCCCGGGTGGCAAAGCGTATTGGTCTGGCTGCTGATGAGGTTGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTgcg < 2:372146/238‑1 (MQ=255)
aagGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGGAT‑AAGGG‑GGGTTTTTTTTTCGCGGGCAT‑TAAAA‑AACCCTTTTTAACCAAAACCCGGCGTTTAGGGTTTTTACCGCAGAAAAAATTATTTAtttttttgggcgc > 2:852918/1‑232 (MQ=255)
cGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGGTGAGGAGGTGGAAGAGGCGTTATTACGATTGCA‑GGC‑GGG‑GGG‑GGAAT‑AAGGG‑GGGTTTATTTATCGCGTGCAT‑AAAAA‑AACCCTTCATAACAGGAGACCGGGGTTCAGGGGTAATAACCCAAAAGAACTTATTTTTTTCTTGTGCGCTCTGAGGAGG‑AAACGag > 2:29947/1‑238 (MQ=255)
ggtgCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGG‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCCTAAAAACTTATTTATTCTTTTCGCGCTCGACAGAGG‑GAACGAttt > 1:298831/1‑238 (MQ=255)
ggtgCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGG‑GTGATTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGATCAGGGTTATTAAGCCAGAAGAACTTCTTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGAttac > 1:482872/1‑237 (MQ=255)
ggtgCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGG‑GGAAT‑AAGGG‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCCGAAGAACTTATTTATTCTTTTCGCGCTCGAAGGAGG‑CAACGATTTc > 1:23959/1‑239 (MQ=255)
ggtgCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTAAGCTTGCA‑GGC‑GGG‑GGG‑GGAAT‑AAGGT‑GTGTTTATTTAACCGGGGCAT‑AAAAA‑AACCCTTACTAAACGAAGCCCGGGGGTGAGGGTTGTTTAGCACGCAGAACTTTTTTTTTCTTTTAGCGCCCGAGAGGGG‑GGACGAttta > 2:298729/1‑238 (MQ=255)
gTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGGAT‑AAGGT‑GTGGTTATTTATCGCGGGCAT‑AAAAA‑AAACCTTACTAACCGAAGCCCGGCGTTCAGGGGTATTAACCCAGAAGAACTTATTTAATCTTTGCGGGCCCGAAGGAGG‑CAACGATTTCAACTTTa > 1:303803/1‑239 (MQ=255)
gTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GGGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAACCCGGCGTTCAGGGTTATTACGCCAGAAAAACTTTTTTATTCTTTTCCGGCTCGAAGGAGG‑GAACGATTTCAGCTTTa > 1:6935/1‑239 (MQ=255)
gTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGG‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGGTATTACGCCAGAAGAACTTATTTTTTCTTTTCGCCCCCCAAGGAGG‑CAAAGATTTTAACtttt > 1:508751/1‑238 (MQ=255)
gTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCGGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGG‑GGGTTTTTTTATTGCGGGCCT‑AAGAA‑AACCCTTACTAACCCAAGCCCGTGGGTTAGGGGTATTACGACCACAGAATATTTTTATTCTTTTTGCGCCGGCAGGAGG‑CAACGAttttgactttt > 2:25877/1‑231 (MQ=255)
gAATCAGGTGCGGATTATGGATCTACACGGCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAg < 1:763623/238‑1 (MQ=255)
tCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGG‑GGGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCCGGGGTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGca > 1:658724/1‑236 (MQ=255)
tGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GGGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGGTATTTCGCCCGAAGAACTTATTTATTCTTTTCGCCCCCGCAGTAGG‑CAACGATTTCGGCTTTATCGGG‑TTCtt > 1:805093/1‑238 (MQ=255)
ggATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTccc < 1:852686/238‑1 (MQ=255)
ggATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCa < 1:707205/239‑1 (MQ=255)
aTCTACACGCCCGGCTGGCAAAGCGGATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAg < 1:231283/212‑1 (MQ=255)
ttacctgCCGGGCTGGGAAAGTGTTTTGGTCTGGCTGGGGATTGGGTGGTGTAAGAGGCGTTATTACGGTTGCA‑GGC‑GGT‑GGT‑GGATT‑AAGGG‑TTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACTATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCt < 2:88594/233‑1 (MQ=255)
tACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGG‑GGAAT‑AAGGG‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAAATTATTTATTTTTTTCGCGCTCTAAGGGGG‑CAACCATTTCAGCTTTTTCTGCTTTCTCGGTTTTCCCAccc > 2:615773/1‑238 (MQ=255)
ccGGCTGGCAAAGCGTATTGGTCTAGCTGCGGATGCGGTGGTGGAAGAGGCGTTATTACGCTTGAA‑GGC‑GGG‑GGT‑GGAAT‑AAGGG‑GGGTTTATTTATCGCGGGTAT‑AAAAC‑AACCCTTCCTAACCGAAGCCCGGCGTTTAGGGGTATTACACCAAAAGAACTTTTTTCTTCTTTGACCGCCCCACGGGGG‑CAACGCCTTCACAGTTAGCGTG‑TTCTTCGTTTTCCCAcccccccacctt > 2:446538/1‑230 (MQ=255)
cAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTc > 1:571702/1‑192 (MQ=255)
cAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTc < 2:571702/192‑1 (MQ=255)
gTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGcc < 1:274067/237‑1 (MQ=255)
tGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GGGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTc < 1:406559/239‑1 (MQ=255)
tCTGGCTGGGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGa < 1:852918/238‑1 (MQ=255)
tCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTGATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGa < 1:121632/238‑1 (MQ=255)
gCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTAATAAACGAAGCCCGGCGTTTAGGGGTATTACTGCAACAGAACCTATTTTTTCTTTGGGCGCTCGGAGGTGG‑GAACGATTTCAGCTTTAACGGC‑TTTTGCGTTTTTCCCACCTTCAACATTTACCCA‑CTTTGCTTTTTctggggct > 2:593013/1‑232 (MQ=255)
gCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGG‑GGT‑GGAAT‑AAGGT‑GGGGTTATTTATCGCCGGCCT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGGTATTACGCCAAAAGAACTTATTTATTCTTTTCGCGCTCGAAGGGGGACAAC‑ATTTTACCTTTAGCGGC‑TTCTGACGTTTCCCCACCCTCCCCTCTTACCCACCTTCCCtttttgtgggct > 2:121632/1‑232 (MQ=255)
gATGAGGTGGTGGAAGGGGCGTTATTACGCTTGAA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTa < 1:298643/238‑1 (MQ=255)
gtggAAGAGGCTTTATTACGCTTGAA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCgaa < 1:37711/238‑1 (MQ=255)
ggggAAGCGGCGGTAGTTCGGTTGGA‑AGC‑GGT‑GGG‑TGAAT‑AAGGT‑GTGTTTAATTATCGGCGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCgaa < 1:684432/236‑1 (MQ=255)
ggCGTTATTACGCTTGCA‑GCC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGACGAAGCGAGc > 1:820957/1‑239 (MQ=255)
ttttagtcTTGGA‑GGG‑GGT‑GGT‑GGAAT‑AAGGT‑TTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGAttt < 2:23959/232‑1 (MQ=255)
tattaCGCTTGCA‑GGC‑GGT‑GGT‑TGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGAttt < 1:581281/239‑1 (MQ=255)
agCTTTCA‑GGC‑GGT‑GGT‑GGAAT‑TGGGG‑GTGTTTATTTAACGGGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCt < 2:107721/238‑1 (MQ=255)
ggt‑ggt‑GGAAT‑AAGGT‑TTGTTTTTTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTAGTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGtt < 2:371032/238‑1 (MQ=255)
gggAAT‑AAGGT‑GTGTTTATTTAGCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTGCACCCA‑CTTGCCTTTTTCGAGGGCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGc < 1:664551/237‑1 (MQ=255)
tgAAT‑AATGTGGTGTTT‑TTTATCCGGGGAAT‑AAAAA‑AACCCTTGCTAACCGAAGTCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCa < 2:298831/237‑1 (MQ=255)
ggAAT‑AAGGT‑GTTTTTATGTATCGGGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCa < 1:25877/238‑1 (MQ=255)
aaT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCC‑CTTTCCTTTTTCGAGGTCTTTGGAGTGCTCGAAGAAGTAAGCGATTTTCGCTTTCAGAGGTTTAGGAAGAt > 2:204098/1‑239 (MQ=255)
gt‑gtgtTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTTACCCA‑CTTGCCTTTTTCGCGGTCTTTGTAGTGCTCGCAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAAATAGTaaa > 2:244866/1‑239 (MQ=255)
t‑gtgtTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTTCCTTTTTTGAGGCCTTTGTAGAGCTCGAAGAAGTGAGAGATTTGCGCTTTAAGCGGATCGGGGAGAGCggttaa > 2:109997/1‑234 (MQ=255)
t‑gtgtTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGGGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTAAc > 1:15265/1‑239 (MQ=255)
t‑gtgtTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGGTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAATGAGGGGTTTGCGCTTTCAGCAGTTAAGGCAGATGGTGAAc > 2:373001/1‑239 (MQ=255)
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CTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCA‑GGC‑GGT‑GGT‑GGAAT‑AAGGT‑GTGTTTATTTATCGCGGGCAT‑AAAAA‑AACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGG‑CAACGATTTCAGCTTTAGCGGC‑TTCTGCGTTTTCCCAACCTTCAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTAAC > NC_000913/4448808‑4449283
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
