Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,550,685 |
T→C |
N597D (AAC→GAC) |
malP ← |
maltodextrin phosphorylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,550,685 | 0 | T | C | 100.0%
| 149.4
/ NA
| 41 | N597D (AAC→GAC) | malP | maltodextrin phosphorylase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (17/24); total (17/24) |
AGTTTTTCCGCCGCCGAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTTGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTCGCGCC > NC_000913/3550609‑3550760
|
aGTTTTTCCGCCGCCGAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGAt > 1:674303/1‑80 (MQ=255)
gTTTTTCCGCCGCCGAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCa > 1:674314/1‑81 (MQ=255)
gTTTTTCCGCCGCCGAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCa < 1:674259/81‑1 (MQ=255)
ccgccgccgAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCa < 2:674260/80‑1 (MQ=255)
gccgccgAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGc > 2:674311/1‑80 (MQ=255)
gccgAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACt < 1:674261/81‑1 (MQ=255)
cgAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACttt < 1:674262/81‑1 (MQ=255)
gAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTttg > 2:674306/1‑81 (MQ=255)
aaaCGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTttgt > 2:674312/1‑81 (MQ=255)
aaCGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTttgtt > 1:674302/1‑81 (MQ=255)
aCGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTttgttg < 2:674263/81‑1 (MQ=255)
aCGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTttgttg < 2:674264/81‑1 (MQ=255)
cGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGa > 1:674318/1‑81 (MQ=255)
gCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGAt < 1:674265/81‑1 (MQ=255)
aataatCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCg < 1:674266/81‑1 (MQ=255)
cGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGat < 2:674267/81‑1 (MQ=255)
ggCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGat > 1:674307/1‑80 (MQ=255)
aaCACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATAttc < 2:674269/81‑1 (MQ=255)
aaCACCACCTTCAACTTATCGCCAACCAGCGAATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATAttc < 2:674268/81‑1 (MQ=255)
accaccTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATAttcttc < 1:674270/81‑1 (MQ=255)
ccaccTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCg < 2:674271/81‑1 (MQ=255)
caccTTCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGc > 2:674330/1‑81 (MQ=255)
ttCAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAgg > 1:674309/1‑81 (MQ=255)
cAACTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGgt < 1:674272/80‑1 (MQ=255)
aaCTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGgta < 2:674273/80‑1 (MQ=255)
aCTTATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGgtagt < 2:674274/81‑1 (MQ=255)
ttATCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGtagtag > 1:674310/1‑81 (MQ=255)
aTCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGtagtag < 1:674275/79‑1 (MQ=255)
aTCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGc < 1:674276/80‑1 (MQ=255)
tCGCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGccc < 1:674277/81‑1 (MQ=255)
gCCAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCgg > 1:674304/1‑81 (MQ=255)
cAACCAGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTg < 1:674278/81‑1 (MQ=255)
aGCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCt > 2:674321/1‑81 (MQ=255)
gCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCtt < 1:674280/81‑1 (MQ=255)
gCGGATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCtt < 2:674279/81‑1 (MQ=255)
gATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTcg > 1:674316/1‑81 (MQ=255)
gATCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTcg > 1:674317/1‑81 (MQ=255)
aTCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTcgc < 1:674281/81‑1 (MQ=255)
aTCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTcgc < 2:674282/81‑1 (MQ=255)
aTCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTcgc > 2:674313/1‑81 (MQ=255)
aTCGTTGTCGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTcgc > 2:674319/1‑81 (MQ=255)
gttgtcGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTCGCGcc > 1:674323/1‑81 (MQ=255)
|
AGTTTTTCCGCCGCCGAAACGCAATAATCCGGCAGGAACACCACCTTCAACTTATCGCCAACCAGCGGATCGTTGTTGATCACGTCAGCCACTTTGTTGATCGCAAAGATAATATTCTTCGCCAGGTAGTAGCCCGGTGCCGCTTTCGCGCC > NC_000913/3550609‑3550760
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
