Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,561,929 |
T→C |
intergenic (‑106/‑84) |
glpE ← / → glpD |
thiosulfate sulfurtransferase GlpE/aerobic glycerol 3‑phosphate dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,561,929 | 0 | T | C | 100.0%
| 124.4
/ NA
| 35 | intergenic (‑106/‑84) | glpE/glpD | thiosulfate sulfurtransferase GlpE/aerobic glycerol 3‑phosphate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (22/13); total (22/13) |
TACCGCACAGTTTACGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTTCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGAAAGTGAATGAG > NC_000913/3561859‑3562006
|
tACCGCACAGTTTACGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTAcc > 1:677136/1‑81 (MQ=255)
aCCGCACAGTTTACGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTAcc > 1:677131/1‑80 (MQ=255)
cGCACAGTTTACGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTaa < 2:677096/81‑1 (MQ=255)
gCACAGTTTACGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTa > 2:677138/1‑79 (MQ=255)
gCACAGTTTACGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTa > 1:677137/1‑79 (MQ=255)
tACGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGAtt > 2:677144/1‑81 (MQ=255)
aCGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTc > 2:677133/1‑81 (MQ=255)
cGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCt < 2:677097/81‑1 (MQ=255)
gTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCtt > 2:677139/1‑81 (MQ=255)
tCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCttt < 1:677098/81‑1 (MQ=255)
gAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGc > 1:677149/1‑81 (MQ=255)
gAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGc > 2:677156/1‑81 (MQ=255)
aGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCt > 2:677162/1‑80 (MQ=255)
aTAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTc < 2:677099/81‑1 (MQ=255)
aaCGCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGAt < 2:677100/81‑1 (MQ=255)
gCCATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAAc > 1:677129/1‑81 (MQ=255)
cATAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGa < 2:677101/81‑1 (MQ=255)
aTAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAGTATGTTCGATAACGaa > 2:677152/1‑81 (MQ=255)
aTAATGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGaa > 2:677150/1‑81 (MQ=255)
aTGTTATACATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACAt < 2:677102/81‑1 (MQ=255)
tataCATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTAt > 1:677160/1‑81 (MQ=255)
ataCATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTAt > 2:677145/1‑80 (MQ=255)
taCATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGa < 2:677103/81‑1 (MQ=255)
cATATCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAg < 2:677104/80‑1 (MQ=255)
atatCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCt > 2:677146/1‑81 (MQ=255)
atatCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCt < 1:677105/81‑1 (MQ=255)
tCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCttt > 1:677159/1‑80 (MQ=255)
tCACTCTAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTa < 1:677106/81‑1 (MQ=255)
tAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGa > 1:677171/1‑79 (MQ=255)
tAAAATGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGa > 2:677153/1‑79 (MQ=255)
aaaaTGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGAAAg > 2:677158/1‑81 (MQ=255)
aaaTGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGaaa < 1:677108/79‑1 (MQ=255)
aaaTGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGAAAGt > 1:677172/1‑81 (MQ=255)
aaaTGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGAAAGt < 1:677107/81‑1 (MQ=255)
aaTGTTTTTCCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGAAAGt > 1:677142/1‑80 (MQ=255)
tttcCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGAAAGTGAATGAg > 2:677181/1‑81 (MQ=255)
|
TACCGCACAGTTTACGTCGAAGCGGCAGATAAACGCCATAATGTTATACATATCACTCTAAAATGTTTTTTCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTCGATAACGAACATTTATGAGCTTTAACGAAAGTGAATGAG > NC_000913/3561859‑3562006
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
