Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,413,180 |
(A)5→4 |
coding (153/1164 nt) |
yjfC → |
putative acid‑‑amine ligase YjfC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,413,176 | 0 | A | . | 100.0%
| 182.3
/ NA
| 42 | coding (149/1164 nt) | yjfC | putative acid‑‑amine ligase YjfC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (28/14); total (28/14) |
CATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCT > NC_000913/4413097‑4413248
|
cATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGa > 2:889190/1‑80 (MQ=255)
tcatcGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGaaaacc > 1:889189/1‑79 (MQ=255)
tcatcGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGaaaac < 1:889128/80‑2 (MQ=255)
tcatcGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGaaaac < 1:889127/80‑2 (MQ=255)
atcGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGaaaaccg < 1:889129/80‑4 (MQ=255)
tcGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGAc < 2:889130/81‑1 (MQ=255)
cAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCg < 1:889131/81‑1 (MQ=255)
aTGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGa < 1:889132/81‑1 (MQ=255)
gAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAAc > 2:889199/1‑81 (MQ=255)
gAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAAc > 1:889184/1‑81 (MQ=255)
cTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCAt > 1:889188/1‑81 (MQ=255)
tGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCAt > 2:889207/1‑77 (MQ=255)
gATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGCTTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGAtgt > 2:889267/1‑81 (MQ=255)
gagaGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGcc > 2:889183/1‑81 (MQ=255)
gagTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCtt > 1:889182/1‑81 (MQ=255)
tCGGTCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAg > 1:889195/1‑81 (MQ=255)
tCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAg > 2:889224/1‑81 (MQ=255)
cGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAgg > 1:889208/1‑81 (MQ=255)
ggCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAggtg > 2:889209/1‑81 (MQ=255)
cTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAggtggt < 1:889133/81‑1 (MQ=255)
cTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAggtggt > 2:889194/1‑81 (MQ=255)
ttACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGgtggtg > 2:889212/1‑81 (MQ=255)
ccGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGAt < 1:889134/81‑1 (MQ=255)
cGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATc < 1:889137/81‑1 (MQ=255)
cGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATc < 1:889135/81‑1 (MQ=255)
cGTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATc < 1:889136/81‑1 (MQ=255)
gTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATcg > 2:889243/1‑81 (MQ=255)
gTTTTACTCTGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATcg > 1:889201/1‑81 (MQ=255)
ctctGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCgg < 1:889139/80‑1 (MQ=255)
ctctGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGt < 1:889138/81‑1 (MQ=255)
tGCGCCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTa < 1:889140/79‑1 (MQ=255)
cgcCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTaa < 2:889142/78‑1 (MQ=255)
cgcCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAg < 2:889141/81‑1 (MQ=255)
cgcCAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGAACGCGCGGTaa > 2:889178/1‑78 (MQ=255)
cAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGAt > 2:889203/1‑80 (MQ=255)
cAGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGAt > 1:889216/1‑80 (MQ=255)
cAGATTGAAGAGCAGATCG‑AAAACCGACTGCAGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATg < 2:889143/81‑1 (MQ=255)
aGATTGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATg > 1:889186/1‑80 (MQ=255)
tGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGaa > 2:889221/1‑78 (MQ=255)
tGAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGaa > 1:889196/1‑78 (MQ=255)
gAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGaa > 2:889205/1‑77 (MQ=255)
gAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGaa > 1:889219/1‑77 (MQ=255)
gAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGaa > 2:889220/1‑77 (MQ=255)
gAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGaa > 1:889197/1‑77 (MQ=255)
gAAGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGaa > 2:889227/1‑77 (MQ=255)
aaGAGCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGaa > 2:889230/1‑76 (MQ=255)
agCAGATCG‑AAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCt > 1:889222/1‑81 (MQ=255)
|
CATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCT > NC_000913/4413097‑4413248
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
