Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,101,644 |
T→C |
intergenic (‑21/+163) |
yggN ← / ← yggL |
putative EcfF/protein YggL |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,101,644 | 0 | T | C | 100.0%
| 164.0
/ NA
| 47 | intergenic (‑21/+163) | yggN/yggL | putative EcfF/protein YggL |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (27/20); total (27/20) |
GTGAGCGGTCATTGCCGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCT > NC_000913/3101567‑3101717
|
gTGAGCGGTCATTGCCGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAg > 2:571385/1‑81 (MQ=255)
tGAGCGGTCATTGCCGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAgg > 2:571377/1‑81 (MQ=255)
aGCGGTCATTGCCGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGcc < 1:571318/81‑1 (MQ=255)
gTCATTGCCGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCa < 1:571319/81‑1 (MQ=255)
cATTGCCGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCAtt > 2:571375/1‑81 (MQ=255)
aTTGCCGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCAtt < 2:682479/80‑1 (MQ=255)
ccGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCt < 1:571320/80‑1 (MQ=255)
cGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTgg > 1:571371/1‑81 (MQ=255)
gTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGc > 2:571379/1‑81 (MQ=255)
gTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGc < 2:571321/81‑1 (MQ=255)
cACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGccc > 2:571380/1‑81 (MQ=255)
cACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGccc > 1:571370/1‑81 (MQ=255)
cACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGccc > 1:571378/1‑81 (MQ=255)
aCTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGccc < 2:571322/80‑1 (MQ=255)
aaaGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAg < 2:571323/79‑1 (MQ=255)
aaGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGAtt < 1:571324/81‑1 (MQ=255)
aGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTg < 2:571325/81‑1 (MQ=255)
tgcCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATaa > 1:571381/1‑80 (MQ=255)
gccgccAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAAc > 1:571394/1‑80 (MQ=255)
ccgccAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACaa < 1:571326/81‑1 (MQ=255)
cagcaTTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTAcgc < 2:571327/81‑1 (MQ=255)
gcaTTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGt > 1:571366/1‑81 (MQ=255)
gcaTTTTGCGCATCATAGTCTGCCCTCAAGAAAAAGCCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGt < 2:571328/81‑1 (MQ=255)
caTTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGtt < 1:571329/81‑1 (MQ=255)
aTTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGttt > 1:571397/1‑81 (MQ=255)
aTTTTGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGttt < 2:571330/81‑1 (MQ=255)
ttttGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGtttt < 2:571331/81‑1 (MQ=255)
tttGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTc > 1:571382/1‑81 (MQ=255)
tttGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTc > 2:571376/1‑81 (MQ=255)
tGCGCATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCa > 2:571391/1‑81 (MQ=255)
gcgcATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCAt > 1:571402/1‑81 (MQ=255)
cgcATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATg > 1:571383/1‑81 (MQ=255)
gcATCATAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGc > 1:571389/1‑81 (MQ=255)
atcatAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCg > 2:571390/1‑81 (MQ=255)
catAGTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGa > 2:571392/1‑81 (MQ=255)
gccTTCCCTCAAGAAAAAACCATGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATgcg > 1:571367/3‑81 (MQ=255)
gTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATgcg > 2:571384/1‑81 (MQ=255)
gTCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATgcg > 2:571406/1‑81 (MQ=255)
tCTTCCCTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATgcgg < 1:571332/81‑1 (MQ=255)
cccTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATgcggcg < 1:571333/79‑1 (MQ=255)
cccTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGt < 2:571334/80‑1 (MQ=255)
cccTCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGt > 2:571405/1‑80 (MQ=255)
tCAAGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTaaa > 1:571457/1‑80 (MQ=255)
aaGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAac < 2:571336/79‑1 (MQ=255)
aaGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAac < 2:571335/79‑1 (MQ=255)
aGAAAAAACCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACAcc > 1:571418/1‑81 (MQ=255)
aaaaaaCCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCt > 2:571386/1‑80 (MQ=255)
|
GTGAGCGGTCATTGCCGTCACTGAAAGTGCTGCCGCCAGCAGCATTTTGCGCATCATAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCT > NC_000913/3101567‑3101717
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
