Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,139,164 |
Δ1 bp |
coding (438/867 nt) |
yghU → |
disulfide reductase/organic hydroperoxide reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,139,163 | 0 | G | . | 100.0%
| 176.8
/ NA
| 42 | coding (437/867 nt) | yghU | disulfide reductase/organic hydroperoxide reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (18/24); total (18/24) |
CCTGCTTTATCTGGCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACTGGCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTACGCACCGGTA > NC_000913/3139089‑3139236
|
ccTGCTTTATCTGGCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTc > 2:580354/1‑81 (MQ=255)
aTCTGGCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTa > 1:580370/1‑79 (MQ=255)
aTCTGGCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTa > 1:580358/1‑79 (MQ=255)
cTGGCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAgg > 2:580356/1‑81 (MQ=255)
gCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAgg < 1:580301/78‑1 (MQ=255)
gCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAgg < 2:580302/78‑1 (MQ=255)
gCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGgcg < 2:580300/81‑1 (MQ=255)
gCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGgcg > 1:580366/1‑81 (MQ=255)
gCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGgc < 1:580299/80‑1 (MQ=255)
ggAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGcgcg > 2:580369/1‑81 (MQ=255)
aaaTTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCAc < 1:580303/81‑1 (MQ=255)
ttGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGtt > 2:580400/1‑81 (MQ=255)
ttGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGtt > 1:580373/1‑81 (MQ=255)
ttGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGtt > 1:580352/1‑81 (MQ=255)
tGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGtt < 1:580304/80‑1 (MQ=255)
tGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTc > 1:580365/1‑81 (MQ=255)
ggCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTcc > 1:580351/1‑81 (MQ=255)
gCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTcc < 2:580305/80‑1 (MQ=255)
cTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTc < 1:580306/81‑1 (MQ=255)
cTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTc < 2:580307/81‑1 (MQ=255)
cTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTcggc > 1:580355/1‑81 (MQ=255)
cTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTcg < 1:580308/79‑1 (MQ=255)
cTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCggt < 1:580309/80‑1 (MQ=255)
cTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCggt < 2:580310/80‑1 (MQ=255)
ccGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGtt < 2:580311/81‑1 (MQ=255)
cGCAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGttt < 1:580312/81‑1 (MQ=255)
cAGGATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTg < 2:580313/81‑1 (MQ=255)
gATTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTc < 2:580315/81‑1 (MQ=255)
gATTTGGCAAAGCGTACTGAAACGATGAACT‑CCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTc < 2:580314/81‑1 (MQ=255)
aTTTGGCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCa > 1:580357/1‑81 (MQ=255)
ggCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACttt > 1:580377/1‑81 (MQ=255)
gCAAAGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACttt > 2:580376/1‑80 (MQ=255)
aaGCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTAcc < 2:580316/81‑1 (MQ=255)
gCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCAt < 1:580317/81‑1 (MQ=255)
gCGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCAt > 1:580363/1‑81 (MQ=255)
cGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCAtt < 2:580319/81‑1 (MQ=255)
cGTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCAtt < 2:580318/81‑1 (MQ=255)
gTACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTa > 2:580375/1‑81 (MQ=255)
tACTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTAc < 1:580320/81‑1 (MQ=255)
cTGAAACGATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTACg < 1:580321/80‑1 (MQ=255)
gATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTACGCACCGGt > 2:580342/1‑80 (MQ=255)
gATGAACT‑GCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTACGCACCGGTa < 2:580322/81‑1 (MQ=255)
|
CCTGCTTTATCTGGCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATGAACTGGCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTACGCACCGGTA > NC_000913/3139089‑3139236
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
