Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,139,574 |
A→T |
E283V (GAA→GTA) |
yghU → |
disulfide reductase/organic hydroperoxide reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,139,574 | 0 | A | T | 100.0%
| 127.8
/ NA
| 36 | E283V (GAA→GTA) | yghU | disulfide reductase/organic hydroperoxide reductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (16/20); total (16/20) |
TTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGC > NC_000913/3139499‑3139647
|
ttcaCCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATa < 2:520797/78‑1 (MQ=255)
ttAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGAt < 2:520796/80‑1 (MQ=255)
aCCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAg < 1:520799/80‑1 (MQ=255)
ccGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCg > 1:520845/1‑81 (MQ=255)
cGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGt > 1:520832/1‑81 (MQ=255)
gCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTc < 1:520800/81‑1 (MQ=255)
aCCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAg > 2:520860/1‑81 (MQ=255)
ccAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAgg > 2:520846/1‑81 (MQ=255)
gACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAg < 1:520801/81‑1 (MQ=255)
aCCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAgg < 1:520802/81‑1 (MQ=255)
gCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATATGGTAGATAAGCGTCAGGGGTAAGGGtt > 2:520845/1‑81 (MQ=255)
gCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGtt < 1:520803/81‑1 (MQ=255)
aaTGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGgtg > 2:520856/1‑81 (MQ=255)
aaTGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGgt < 1:520804/80‑1 (MQ=255)
gCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTtcgt > 1:520841/1‑81 (MQ=255)
aGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTtcgtcg < 2:520804/81‑1 (MQ=255)
ttGCATGAGCGCCATGACGCCAGTGATTTCGGGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCgca < 2:520805/81‑1 (MQ=255)
tGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCgcag > 1:520865/1‑81 (MQ=255)
tGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCgcag > 2:520868/1‑81 (MQ=255)
gCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCgcat > 1:520854/1‑79 (MQ=255)
cATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCgcagc > 2:520841/1‑80 (MQ=255)
aTGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCaa < 2:520806/81‑1 (MQ=255)
aGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGcc < 1:520808/81‑1 (MQ=255)
aGCGCCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGc > 1:520860/1‑80 (MQ=255)
cgcCATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCAt < 2:520808/81‑1 (MQ=255)
ccATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATcc < 2:520809/81‑1 (MQ=255)
cATGACGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCa < 2:520810/81‑1 (MQ=255)
aCGCCAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGcc < 2:520811/81‑1 (MQ=255)
ccAGTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGa > 2:520858/1‑81 (MQ=255)
aGTGATTTCGGGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATa < 1:520813/81‑1 (MQ=255)
gTGATTTCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATaa < 1:520814/81‑1 (MQ=255)
tttCGAGACGAATACGGTAGATAAGCGTCAGGGGTAAGTGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCg < 2:520814/81‑1 (MQ=255)
gagaCGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCa > 2:520848/1‑81 (MQ=255)
gagaCGAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCa > 2:520851/1‑81 (MQ=255)
gAATACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccg > 1:520863/1‑81 (MQ=255)
aaTACGGTAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccgc < 2:520815/81‑1 (MQ=255)
|
TTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGC > NC_000913/3139499‑3139647
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
