Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,340,963 |
C→A |
A230E (GCG→GAG) |
yrbG → |
putative transport protein YrbG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,340,963 | 0 | C | A | 100.0%
| 129.5
/ NA
| 37 | A230E (GCG→GAG) | yrbG | putative transport protein YrbG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (14/23); total (14/23) |
CCATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTCATCG > NC_000913/3340888‑3341037
|
ccATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAggggg > 2:629623/1‑81 (MQ=255)
cATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGt > 2:629619/1‑81 (MQ=255)
aTCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGtt > 2:629620/1‑81 (MQ=255)
tCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTc < 1:629565/81‑1 (MQ=255)
aGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCg < 2:629566/80‑1 (MQ=255)
cGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCaa < 1:629567/81‑1 (MQ=255)
cGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCa > 1:629618/1‑80 (MQ=255)
ttGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGt < 1:629568/81‑1 (MQ=255)
gACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTg > 2:629628/1‑80 (MQ=255)
gACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTg < 2:629569/80‑1 (MQ=255)
aCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGaa < 1:629571/81‑1 (MQ=255)
aCGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGaa < 1:629570/81‑1 (MQ=255)
gATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGaaaa > 2:629616/1‑81 (MQ=255)
tGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACg < 1:629572/81‑1 (MQ=255)
ggTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGa < 2:629574/80‑1 (MQ=255)
ggTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGAc < 2:629575/81‑1 (MQ=255)
ggTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGAc < 2:629573/81‑1 (MQ=255)
aCGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACAtt < 2:629576/78‑1 (MQ=255)
aaTTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCgg < 1:629577/81‑1 (MQ=255)
aTTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCgg > 1:629631/1‑80 (MQ=255)
cTATAGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAata < 1:629578/81‑1 (MQ=255)
tCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAatat < 1:629579/79‑1 (MQ=255)
aCCAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGgc > 1:629629/1‑81 (MQ=255)
ccAGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGgcg < 1:629580/81‑1 (MQ=255)
aGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGgcgc > 1:629622/1‑80 (MQ=255)
aGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGgcgc > 2:629636/1‑80 (MQ=255)
aGCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGgcgc > 1:629630/1‑80 (MQ=255)
gCCTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCaa < 1:629581/81‑1 (MQ=255)
cTGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAAc < 2:629582/81‑1 (MQ=255)
tGCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATAACATTGGCGCAAACa > 2:629625/1‑81 (MQ=255)
gCCGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACAt > 2:629627/1‑81 (MQ=255)
cGGAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACAttt < 1:629583/81‑1 (MQ=255)
gAACTGGCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACAttttt < 1:629584/81‑1 (MQ=255)
ggCAACCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAatat > 2:629639/1‑81 (MQ=255)
gCAACCGCAATAGAGGGGTTTCGCAAA‑GTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTg < 1:629585/81‑1 (MQ=255)
aCCGCAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTc < 2:629586/81‑1 (MQ=255)
cAATAGAGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTCATCg < 2:629587/81‑1 (MQ=255)
|
CCATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGGAACCAGCCTGCCGGAACTGGCAACCGCAATAGCGGGGGTTCGCAAAGGTGAAAACGACATTGCTGTCGGAAATATCATTGGCGCAAACATTTTTAATATTGTCATCG > NC_000913/3340888‑3341037
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
